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Detailed information on CNT30124866


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 2e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30539464Physcomitrium patensBrassica napus20.8832.3489.08119forward
CNT3077068Physcomitrium patensBrassica juncea28.2515.8683.85161forward
CNT30264220Physcomitrium patensBrassica rapa28.2519.9883.23161forward
CNT30480204Physcomitrium patensArabidopsis halleri27.7243.6583.54158forward

Expression of CNT30124866

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MAWTKNPNIENIARRPFLSSFTFNSARVSGSSAKPKGSKYLPPG*

>peptide 2 (35 aa)
MKEQTARTSETATSMLQLLATQPYNGQILVDHNLT*

Sequence

>CNT30124866
CCTGTGGGGAAAGCGTAAGTGGAGGAATGAGGATCCATTTTCCTGACAAATCGACATTTACATGAAGGAGCAAACAGCACGGACATCAGAAACGGCTACC
TCTATGTTACAGCTTCTTGCAACGCAGCCATACAATGGACAGATACTAGTCGACCACAATCTTACTTAATCTAGTTCCCGGGGGTGAAGTTGGTGGCGAA
AGCCCAAGCGTTGTTGGAAACAGGGTTGGCGAGGTGATCCAACAAGTTCTCCAGGGGGCCCTTTCCGGTCACAATGGCTTGGACAAAGAATCCGAACATA
GAGAACATAGCCAGACGGCCGTTCTTGAGCTCCTTCACCTTCAACTCAGCGAGAGTCTCGGGGTCGTCAGCCAAACCCAAGGGGTCGAAGTACTTGCCTC
CGGGGTAAAGGTTGGGGTTGCCGAGGTAGTCCAAACCACCATCGCTGAAGATCTGAGCACCGGCCTTGAACCATACTGGCTCCTTGAGAGTCACACGGGA
GTACTTCTGGAGAAGCTCGGGGGTGATGCAGCCAAGGGCTCCGAGCATAGCCCATCTTCCATGAATCAAC