Detailed information on CNT30554522


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30111129Oryza glaberrimaOryza longistaminata42.2864.8293.22457forward
CNT30102064Oryza glaberrimaOryza rufipogon42.2822.1393.44457forward
CNT30577042Oryza glaberrimaOryza barthii37.9331.2399.27410forward

Expression of CNT30554522

Peptides detected in this lncRNA

>peptide 1 (60 aa)
AVPLSSRPRARSSRRSPSSLPSEAIHGHRRFFPETAAISPPPRDTTSCPLHLGFSRASNR*

>peptide 2 (53 aa)
MMTAILLGLEKRIWTTGGSDQDLTQLHLQLTTQPRYRSVLVQNICLFSCIDLQ*

>peptide 3 (60 aa)
MDQTSLSCLFICRCYLELSAVVVRVNSNIYMSRFIVLECITSDSRLFFYRTEGVEFRESG*

>peptide 4 (39 aa)
MPLCFYYLHQGGCCIPDLPVGQAREDATLSHDDCNTSRP*

>peptide 5 (37 aa)
MFRCHGGQGCPCASIISTKEAVAFQISLSGKLGRTLH*

>peptide 6 (52 aa)
PPFPFRLDLGHAARVARRRRFPARPSTATVASSRRPPPSPHPRVTPLLALSI*

>peptide 7 (43 aa)
RRSPFVSTSGTQLASLAVVASQRGHPRPPSLLPGDRRHLPTPA*

>peptide 8 (35 aa)
MEDRDAPVLLLSPPRRLLHSRSPCRASSGGRYIEP*

>peptide 9 (29 aa)
MHKSVAYFSTSQYIDVPNEHEHFSFRYMK*

Sequence

>CNT30554522
CCGCCGTTCCCCTTTCGTCTCGACCTCGGGCACGCAGCTCGCGTCGCTCGCCGTCGTCGCTTCCCAGCGAGGCCATCCACGGCCACCGTCGCTTCTTCCC
GGAGACCGCCGCCATCTCCCCACCCCCGCGTGACACCACTTCTTGCCCTCTCCATCTAGGGTTTTCTCGGGCCTCGAATCGCTAAAGCATGTTCCGCTGC
CATGGAGGACAGGGATGCCCCTGTGCTTCTATTATCTCCACCAAGGAGGCTGTTGCATTCCAGATCTCCCTGTCGGGCAAGCTCGGGAGGACGCTACATT
GAGCCATGATGACTGCAATACTTCTAGGCCTTGAGAAGAGGATTTGGACCACTGGTGGTTCTGACCAAGATTTAACGCAGTTACACCTTCAGTTGACCAC
TCAACCAAGGTATCGATCAGTTTTGGTCCAAAACATATGTTTATTCTCATGCATCGATTTGCAATGACCAAATCTATGCTTCGATCTTTTAATTTGCTAC
AGTTTTCCCTGCTTCTCTAATCAGTACCATTACAGATTTGTCTCTGTGACTGCTTACTGTACTTTCAAATTGCTTTACAGTGCATGCACAAGTCTGTTGC
CTATTTTAGTACTAGCCAATATATAGATGTTCCCAACGAACATGAACATTTCAGCTTTCGGTATATGAAGTGACCGTTGTCTGGCTTGCAACCTTTCCAG
GGTACAAATCAATCAGTTTGGATATGGAACACGCATTGTACGGGTTGCTGCTTATAGGTTGTTTGGATATCACTTAATGGATCAAACAAGCTTGTCATGT
TTGTTTATATGCAGGTGCTATTTGGAATTAAGTGCAGTGGTTGTACGGGTTAATTCAAACATATATATGTCTAGATTCATAGTACTAGAATGTATCACAT
CCGATAGTAGATTATTTTTTTATAGGACAGAGGGAGTAGAGTTCAGAGAAAGTGGCTAGCAAGTAGGCCCCACATTTTTTATATTTTTTCCTAGGCACTT
AAATGTGGGCTTTACCTGTATTTGTGACTGGGTTGCTCCATCATCACAAAGTTGACCCCAAGTTAAAGGGTCACGTTAACA