Detailed information on CNT30577176


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30111129Oryza barthiiOryza longistaminata18.3341.4293.84292forward

Expression of CNT30577176

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MEDRDAPVLLLSPPRRLLHSRSPCQASSGGRYIEP*

>peptide 2 (37 aa)
MFRCHGGQGCPCASIISTKEAVAFQISLSGKLGRTLH*

>peptide 3 (49 aa)
MMTAILLGLEKRIWTTGGSDQDLTQLHLQLTTQPSACTSLLPILVLANI*

>peptide 4 (68 aa)
MHKSVAYFSTSQYIDVPNEHEHFSFRYMKLKNEVTVVWLATFPGYKSISLDMEHALYGLLLIGCLDIT*

>peptide 5 (39 aa)
MPLCFYYLHQGGCCIPDLPVRQAREDATLSHDDCNTSRP*

>peptide 6 (49 aa)
MDETRLSCLFICRCYLELSAVVVRLNSNICMSRFVVLECITSDSRLFFL*

>peptide 7 (31 aa)
KDLSHHAYNMSSHISMIRRFSGKSLSITSGK*

Sequence

>CNT30577176
AAGGATTTGTCACATCATGCCTATAACATGAGCTCTCATATTTCTATGATACGTAGGTTTAGTGGCAAATCATTAAGTATAACGAGTGGCAAATAGTTAA
AATCCCCCATTCTCTCCACCGCGTCATTGCCTCCGACGGCGCCGCCGTTCCCCTTTCGTCTCGACCTCGGGCACGCAGCTCGCGTCGCTCGCCGTCGTCG
CTTCCCAGCGAGGCCATCCACGGCCACCGTCGCTTCTTCCCGGAGACCGCCGCCATCTCCCCACCCCCCGCGTGACACCACTTCTTGCCCTCTCCATCTA
GGGTTTTCTCGGGCTTCGAATCGCTAAAGCATGTTCCGCTGCCATGGAGGACAGGGATGCCCCTGTGCTTCTATTATCTCCACCAAGGAGGCTGTTGCAT
TCCAGATCTCCCTGTCAGGCAAGCTCGGGAGGACGCTACATTGAGCCATGATGACTGCAATACTTCTAGGCCTTGAGAAGAGGATTTGGACCACTGGTGG
TTCTGACCAAGATTTAACGCAGTTACACCTTCAGTTGACCACTCAACCAAGTGCATGCACAAGTCTGTTGCCTATTTTAGTACTAGCCAATATATAGATG
TTCCCAACGAACATGAACATTTCAGCTTTCGGTATATGAAGCTCAAGAATGAAGTGACCGTTGTCTGGCTTGCAACCTTTCCAGGGTACAAATCAATCAG
TTTGGATATGGAACACGCATTGTACGGGTTGCTGCTTATAGGTTGTTTGGATATCACTTAATGGATGAAACAAGGTTGTCATGTTTGTTTATATGCAGGT
GCTATTTGGAATTAAGTGCAGTGGTTGTACGGCTTAATTCAAACATATGTATGTCTAGATTCGTAGTACTAGAATGTATCACATCCGATAGTAGATTATT
TTTTTTATAGGACAGAGGGAGTAGAGTTCAGAGAAAGTGGCTAGCAAGTAGGCCCCACATTTTTTATATTTTTTCCCAGGCACTTAAATGTGGGCTTTAC
CTGTATTTGTGACTGGGTTGCTCCATCATCACAAAGTTGACCAAGTCAAAGGGTCACGTTAACAAAACCGTCCTGTAAAACTATCGAGAGAATCAAAATT
TATCGGTTTTAGTAATTAAAGGGTTGAGATATCTGGCATGGTATTGTGGTTAAAGGGATATGATTTAGATTCGACGACGAGTTAAGGCAGTCAAAGCGGA
CTTAATCCGATTTTTGTTAGCAAATTTTAGCCATCTAGTTGTCATGTATTAACATTAGGAAACCGAGGACGGAGAGAGAGGAGTGAACGGGGGCACGGTT
AACGACCAAAGGCAGGAAAGAAAATTATTATTAATTCAAATCCTGATATTTTAAATTAACAACGTTGCTTTCAATGCACTGAATATTCTGCTATAAATCA
TGTTAACGATTTTAAAACAAAGAGAATTCAAAAAAATTATCCCTGACCTTTCTAATTATTAAACATATTGTTAATTAGGGTTTTCTACTTGTTAACCAAA
GTAATTTCTATAGACAATTTAGAGTAAATTGCGCTCATGGTATTTGAACTTGTATGGCGGGTGTGAATAGATACAACAACTTGCAGGTTGCTC