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Detailed information on CNT30102064


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554522Oryza rufipogonOryza glaberrima22.1342.2893.44457forward
CNT30111129Oryza rufipogonOryza longistaminata32.394.6199.4667forward
CNT30576929Oryza rufipogonOryza barthii10.9928.4892.95227forward

Expression of CNT30102064

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MHKSVAYFSTNQYIAVPNEHEHFSFQYMKFMNEVTVVRLATVPWCKSISLDMEHALYGLLLIGCLDIT*

>peptide 2 (61 aa)
MVQINQFGYGTRIVRVAAYRLFGYHLMDQTSLSYLFIYMCYLELSAVVVRVDSELIPAYIR*

>peptide 3 (76 aa)
KIKLYKPAVATVHYSSVRAATSSVILGPWISILLPVFSVHAWLPGASSTVLIEAHYLYAHDPHLLDLTCPASPSPQ*

>peptide 4 (47 aa)
MDFIKLSRILPLFLISYNHLYADQFLSKTYVYSHALICNDQIYASIF*

Sequence

>CNT30102064
ATAAAATAAAACTCTATAAACCTGCCGTCGCTACTGTACACTATTCATCCGTCCGCGCGGCCACGTCATCGGTAATTCTGGGTCCTTGGATCAGCATCTT
GCTTCCTGTCTTCTCCGTCCACGCGTGGCTTCCAGGAGCTTCCTCTACAGTGCTCATCGAGGCGCACTATCTCTACGCACACGATCCCCACCTCCTCGAC
CTGACCTGCCCAGCCAGCCCCTCTCCTCAGTGAACTCCGCCTCAGCCGTCGCCACCCGCCGTCCCGTTCCTCCCTGCGACCTCTGCTTGGACAGCTTGCA
GCTCGGATCCTCGGAGCCGCTGCCTCGATTTCCTCCTACTCGGTCCACTCGCTGTTCCTCCTGCAACCTTCCCCTTGGCACTCTGCTCTATGGTGCTTCC
GGCTTCATCGCCGCCTCACCAACCACTGCTTTCTGGTCCCCTCACCTCCGGCTGGAAGATTTGGCCAGTGTAAAGCATTTGCAAATTTTGGCGACTTTCT
TTGATGGGGATTATATGGATCTAGGGATTACTTTGATGCTGTCCAGTTAACCACATTTGGTTGATTCAAGCGGGTCTCCTCACTTCCGGTTGGAAGATTT
GGCCAGTGCTAGAGCATTTGCAAATTTTATGGATTTTCTTCGATGGGGAGTATATGGATCTGAGGATTTCTTTGGTACTATCCATTTAGCCTTATATTGT
TGATTCATACAGGTCCCCTCATCTACTCCTGCTGGAGGCTGCTGCTGCGGTTTTCTTGATGGATTTTATCAAACTCTCTCGGATACTTCCCCTCTTTCTT
ATTTCTTACAATCATTTATATGCCGATCAGTTTTTGTCCAAAACATATGTTTATTCTCATGCATTGATCTGCAATGACCAAATCTATGCTTCGATCTTTT
AATTTGCTACAGTTTTCCCTGCTTCTCTAATCAGTACCATTACAGATTTGTCTCTGTGACTGCTTATTGTACTTTCAAATTGCTTTACAGTGCATGCACA
AGTCTGTTGCCTATTTTAGTACTAACCAATATATAGCTGTTCCCAACGAACATGAACATTTCAGCTTTCAGTATATGAAGTTCATGAATGAAGTGACCGT
TGTCCGGCTTGCAACTGTTCCATGGTGCAAATCAATCAGTTTGGATATGGAACACGCATTGTACGGGTTGCTGCTTATAGGTTGTTTGGATATCACTTAA
TGGATCAAACTAGCTTGTCATATTTGTTTATATACATGTGCTATTTGGAATTAAGTGCAGTGGTTGTACGGGTTGATTCAGAGTTGATCCCAGCTTATAT
CAGATAAAAAGGTCACACATCATTCTGTGAAACTGGACCATCTCCAGATGCATTAGTGATCAACCTACAAGTTGCTTTCATCTTTTAGGGACAGAGGTAG
CAAGTACCTGCATTGCTCTAAGCCTCTAACTACTTAGGTGGCAAAGAAAGAGGAGTTGCCTGCGATTTTGCCCAGCCACTTTGGTTTGGAAGAAAGAAAT
TGATGACTGAATCAATGAAGCTGTGAGTGGCAACGTTGCCTGTACAGAAGGATTGGTCTATCTTACTTTTGGCTATCAAATTGTACCATGTGCTCATATA
CCTACAATTGATTTAAGCTGGCATCAATAAGAATTACACCAACAAATATCTTCATATACCAATATTTTCTATAGTATCTATTCATACACCATGTAATCAA
TTCGATCTTCCCTGTGATCTTCCACCACCTGAAATTGAGATTAATGTGATAGATATCTTTTATTGTTTGAGTAATTGTTGTGATAAATATTTTTACTGAT
TTTTGTGTTTTGGCATCCGCGGCAACGCCGCGGGGTCCCTGCTAGTTTTACCTCTATCCCCACGCCAACGCAATTCCGCCAACCCTAAAGTAGTGAGTAT
ACATACTACCTCCGTCCAACAAAAAAAAAAAACTAGGTTTTCATGCCAACGTTGGACACGGAAACCAGGGTTTGTTTTTTTTGACGAAGGGAGTAGGATA
TTGTACACCCTAAAAAGAAAAGAAAAAAAATACTACTCCCTCCATCCCATAATATAGCAATCTAG