Detailed information on CNT30450663


BLAST search results

BLAST vs Swiss-Prot:
sp|O64477|Y2913_ARATH, E-value = 8e-100

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554296Saccharum spontaneumOryza glaberrima33.09100.3682.88555forward
CNT3012901Saccharum spontaneumZea mays17.0510095.8286forward
CNT30106963Saccharum spontaneumOryza longistaminata7.9358.5990.23133forward

Expression of CNT30450663

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MTFCTKFTVLKHSTIQKLSILGSNHVQLYSYSSSIALTNSRLFDLWTLEM*

>peptide 2 (41 aa)
MNSYTSSLRDPSEQNPRRRTKLTCCVVPMVLTSARNCFSPC*

>peptide 3 (74 aa)
MHYKSNCSDKPLDSLESSPPQQSEHYQVASHFPWHRTYQAEPLQSSNWSGTAVVLSFCTRHCNPGDPNHSEPSG*

>peptide 4 (56 aa)
MAVESGSFPLNTEPKAPPPSLSEKLLVTCCRSLYLKAIIVPPAVLDILRVLSRRYF*

>peptide 5 (39 aa)
MPNKAATTVISICITRAIVQTSHLTVLRAHRHSSLSIIR*

>peptide 6 (33 aa)
MHQQATLQALVSSSTFASSPLSLGSSKVRTSPS*

>peptide 7 (30 aa)
MLQITIPKGDHCAPSSLGYPESPFSAVFLK*

>peptide 8 (30 aa)
MLCCANGAHLSTKLLLPLLNSIEPLHSNGC*

>peptide 9 (29 aa)
MITVLLFLESGSSEAASLRKSVPPPFPLY*

Sequence

>CNT30450663
GGGGAATCTTGCATGTGTAATGTAAATGCAACAGTAGTACCTTTCTTGTATTGGTTATGACATTCTGCACTAAATTTACAGTACTGAAGCATAGCACGAT
ACAAAAGCTGAGCATATTAGGTTCTAATCATGTACAGCTGTACTCATACTCTTCAAGTATTGCCCTAACAAATTCCAGGTTATTTGATTTATGGACTTTG
GAGATGTGAACTGCCTGAAGTAGCACTGCGCGTCTGGGAAGTTGTCGTGCTGTTCTGTGTCTGGGAAGTCTGACTTGAAGATATATCTGAAAAGAAGTTT
ATAACATCAGGGCTTTCGCCAAGAACTTTCAATGACCTTGGAACAGGAGGCATGTTAACGTCAAGGAATCCCTCGAGGATTTGAACAATCTGACCAGTCG
TAGGTCTAGCAGTTTCGTCATCTTGGATGCACCAACAGGCAACCTTACAAGCTCTTGTGAGTTCATCAACATTTGCATCATCTCCATTGAGCTTGGGGTC
CAGCAAGGTCCGCACATCTCCTTCATGAAGCTTGCTTGCAGCCAAGGTTGGGAAAAAGGTGGATCCATGCTGTTCTCCGTGACCAGCATTTCTCCTGCCT
GATATGAGTTCGAAGAGCATCATGCCATAGCTAAAGACATCTGCCTTTGCTGTTATTGCCACACCACTGATCCATTCAGGTGCAAGGTAATTTAATCCCC
TTGCTGTTCCAAGTGCTATTTGGTACCTGGTAGCCCAGCTCATTGCTGTTGTCTCACCAGAGAATAGCTGCAGGTCCAGGGAGCCCTTTGGCATGAACTC
ATACACAAGCAGCCTCCGTGATCCTTCTGAGCAAAATCCAAGGAGGCGGACCAAATTAACATGCTGTGTTGTGCCAATGGTGCTCACCTCAGCACGAAAT
TGCTTCTCCCCTTGCTGAACTCCATCGAGCCTCTTCACAGCAATGGCTGTTGAATCTGGGAGCTTCCCTTTGAACACTGAGCCAAAGGCACCTCCACCCA
GCCTCTCCGAGAAGTTGTTAGTGACATGCTGCAGATCACTATACCTAAAGGCGATCATTGTGCCCCCAGCAGTCTTGGATATCCTGAGAGTCCTTTCTCG
GCGGTATTTCTGAAATAGGAAGTATGACACAATAGAAAGGACTATTAAAACTGCAGCAACTCCACCAACAACTGCACCAATGATCACTGTCTTGCTCTTT
TTGGAGTCTGGCAGCTCAGAAGCTGCAAGCCTGAGGAAGAGTGTGCCTCCTCCATTTCCGCTGTATTGATCCTGAAGGTTAATCAGATCCCCATGCCAAA
CAAAGCAGCCACTACTGTTATAAGTATATGCATTACAAGAGCAATTGTTCAGACAAGCCACTTGACAGTCTTGAGAGCTCACCGCCACAGCAGTCTGAGC
ATTATCAGGTAGCCTCTCATTTTCCATGGCATAGAACTTATCAGGCTGAGCCTTTGCAGAGCTCGAATTGGTCTGGCACTGCAGTGGTACTCTCCTTTTG
CACCCGCCACTGTAATCCTGGAGATCCCAATCACTCTGAACCTTCTGGCTGAACCCCCTGATGCAGTTGCAGAATGGCAGTGCATTGAGGTTGCAGCTAC
CATATGCCCCGCAAAGTGCGTAAACCTCACACTGTGTCCTTGGCTGGGACCAGAACAAGATCCATGACTGGGAGGCA