Detailed information on CNT3068316


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30200101Leersia perrieriPisum sativum26.429.987.58153forward
CNT30491922Leersia perrieriOlea europaea25.5651.0385.14148forward
CNT30283847Leersia perrieriTriticum aestivum52.522.2596.05304forward
CNT30414626Leersia perrieriPapaver somniferum32.1242.2788.71186forward
CNT30110673Leersia perrieriOryza longistaminata46.810098.52271forward
CNT3021701Leersia perrieriPopulus trichocarpa32.314.2582.89187forward
CNT3039143Leersia perrieriCucumis melo32.316.8288.24187forward
CNT30103691Leersia perrieriOryza rufipogon54.0618.0597.44313reverse complement
CNT30174665Leersia perrieriVigna angularis22.4511.9290130forward

Expression of CNT3068316

Peptides detected in this lncRNA

>peptide 1 (55 aa)
DKKPLIRIKPSSQPNQKLELCALYAPKAIDPDHLIRQYEHDTKANPCKCPFSKEK*

>peptide 2 (64 aa)
MNTIPRQTHANAPLAKKNRHDVTLFYRIGKDYPYPIYLTLLGDSVSESVNIYFIPLKIRSQFCS*

Sequence

>CNT3068316
GGATAAAAAACCGCTAATTCGTATAAAGCCATCGAGCCAGCCCAACCAGAAACTAGAGCTGTGTGCATTATATGCACCGAAAGCAATCGACCCGGATCAT
TTAATACGACAGTATGAACACGATACCAAGGCAAACCCATGCAAATGCCCCTTTAGCAAAGAAAAATAGACACGATGTCACTTTATTTTATCGCATTGGC
AAAGACTATCCATATCCTATATACCTAACCCTTCTAGGGGATTCTGTGTCAGAAAGCGTGAATATTTATTTCATTCCATTAAAAATAAGAAGCCAATTCT
GTTCGTAAGAAGAAAGAGAAGCAGATCTATTCTATACTCGATAAGTGCCAATATGCAATGGGCAGCTTGGCCTATTTAGAAAAGACAAACAATAGATCCC
TATCTCTTTTTGTTTAGTATTCGAATCACTTATTCTTTTTTCTTTATTCAATCTGTCTTATCCTACTTATGTGTATAATCTTTCAATCTATGTATTATTT
CAATCTACGTATTAATAGAATCTATAGTATTCAAATAGAATAAGAAAAAAAGTAAAAACAATAAACTGCGGATTCTTTC