Detailed information on CNT30110673


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30200101Oryza longistaminataPisum sativum42.077.3788.6114forward
CNT30491922Oryza longistaminataOlea europaea49.8246.5588.15135forward
CNT3090302Oryza longistaminataSolanum tuberosum35.7915.3292.7897forward
CNT30283847Oryza longistaminataTriticum aestivum10019.8498.15271forward
CNT3068316Oryza longistaminataLeersia perrieri10046.898.52271forward
CNT30715684Oryza longistaminataMalus domestica golden27.688.6989.3375forward
CNT30414626Oryza longistaminataPapaver somniferum54.2433.4191.16147forward
CNT3054326Oryza longistaminataAmborella trichopoda40.597.5288.18110reverse complement
CNT3021701Oryza longistaminataPopulus trichocarpa54.6111.2885.14148forward
CNT3039143Oryza longistaminataCucumis melo54.6113.3191.89148forward
CNT30103691Oryza longistaminataOryza rufipogon54.988.59100149reverse complement
CNT30594947Oryza longistaminataEragrostis curvula38.3810.5686.54104reverse complement
CNT30174665Oryza longistaminataVigna angularis33.588.3491.2191forward

Expression of CNT30110673

Peptides detected in this lncRNA

>peptide 1 (44 aa)
SQPNQKLELCALYAPKAIDPDHSIRQYEHDTKANPWKYPFSKEK*

>peptide 2 (76 aa)
MHRKQSTRIIQYDSMNTIPRQTHGNTPLAKKNRHDVTLFYRIGKDYPYPMYLTLLGDSVSESVNIYFIPLKIRSQFC

Sequence

>CNT30110673
GAGCCAGCCCAACCAGAAACTAGAGCTGTGTGCATTATATGCACCGAAAGCAATCGACCCGGATCATTCAATACGACAGTATGAACACGATACCAAGGCA
AACCCATGGAAATACCCCTTTAGCAAAGAAAAATAGACACGATGTCACTTTATTTTATCGCATTGGCAAAGACTATCCATATCCTATGTACCTAACCCTT
CTAGGGGATTCTGTGTCAGAAAGCGTGAATATTTATTTCATTCCATTAAAAATAAGAAGCCAATTCTGTTC