Detailed information on CNT30100835


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 2e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30248153Oryza rufipogonAvena sativa30.1619.8886.47133forward
CNT30664801Oryza rufipogonTriticum dicoccoides15.1921.4189.5567forward
CNT30348036Oryza rufipogonEragrostis tef38.3230.2385.21169forward
CNT30596869Oryza rufipogonOryza meridionalis68.7135.4494.39303forward
CNT30116331Oryza rufipogonOryza nivara104.9959.0694.82463forward

Expression of CNT30100835

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MAVQRQTAASRSTSPPSSGQHSSLAGTPTLSLSRLSTLAHTPSFSASIGHLFPPPDGGDGG

Sequence

>CNT30100835
TGGAGGAAACTTTTATTTGACAGTACGCATTAAAATAACAAGATACATATATTAGATGATCGATCTGATCATCAATAAGTATATATGTATGACACAACTG
CAACACACAGACTAAGCCATGCAAAGCTTAAGCCTTAATTAGGTAGCTAGGGTTGTGGTGGTAATGAAGATTAAGAATCAGATGAGTGGGCAGGAGAAGT
CGGAAGGGCAGGTCTTGTGGCAGTAGTTGAGGAGGAGGACGAGGACGTTGGCCTTGATGGCGGTGCAGAGGCAGACGGCGGCGTCGAGGTCGACGAGCCC
CCCCAGCAGCGGGCAGCACTCCTCGCTCGCCGGCACCCCCACCTTGAGCTTGAGCAGGTTGAGCACGTTGGCGCACACGCCCAGCTTCAGCGCGTCGATC
GGGCACTTATTCCCTCCACCCGACGGCGGCGACGGAGGCGG