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Detailed information on CNT30596869


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 4e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30100835Oryza meridionalisOryza rufipogon35.4468.7194.39303forward
CNT30116331Oryza meridionalisOryza nivara57.7863.0191.9494forward

Expression of CNT30596869

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MLALMAVQRQTAASRSTRPPSSGQHSSLSGTPTLSFSRLSTLAHTPSFSASIGHLFPPPPPPDGGGITGGVGVGQ*

Sequence

>CNT30596869
CGGAAAACAGGCTTAATTAATTTGTTAATGAGCAGATAGATAGATAGATAGATAGATAGTAGCACAAGTAGTACACTGGAGGAAACTTTTATTTGACAGT
ACGCATTAAAATAACAAGATACATAGATGATCGATCTGATGATCAATCACTGATCGATAGATCGAGATAAAAGTACGTAGAGTACAGTTGATATATATCG
ACATATATATGTATGACAACTGCAACACACAGTAATACGCGACTAAGCCATGCATGCAAAGCTTAAGCCTTAGCGGTAGCTAGGGTTGTGGTGGTAATGA
AGAATTAATCAGAGTGGGCAGGAGAAGTCGGAGGGGCAGGTCTTGTGGCAGTAGTTGAGGAGGAGGACGAGGATGTTGGCCTTGATGGCGGTGCAGAGGC
AGACGGCGGCGTCGAGGTCGACGAGGCCACCCAGCAGCGGGCAGCACTCCTCGCTCTCCGGCACCCCCACCTTGAGCTTCAGCAGGTTGAGCACGTTGGC
GCACACGCCCAGCTTCAGCGCGTCGATCGGGCACTTATTCCCTCCACCGCCACCACCCGACGGCGGCGGCATCACCGGCGGGGTCGGTGTGGGGCAGTAG
GGCTCGCATGCCTGCACTACTGCACCCATCTGCATGGTGATGAGCACATTGAGGGCAAGGAACAGCGCACAGACCTGCACCTTCTTCTTGCCGCCCATCG
TCTTAATTAATTAAGTAGCTACTACTGCTTAGCAATCAGCAGCTTCTGCCTATATATAGCTCAGCTCGTTCGATCGATCAGAAGAAGAAGCTGGAGCTGG
AGATGGAGCTGCCTTTTGATATTAATTTGCTAGCTAGCTCGATCGGCCGGGATGC