« Back to Solanum tuberosum search


Detailed information on CNT3091768


BLAST search results

BLAST vs Swiss-Prot:
sp|P07370|CB2B_SOLLC, E-value = 2e-180

BLAST vs NONCODE:
NONSTUT001352, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30628736Solanum tuberosumVigna unguiculata56.6779.1983.96586forward
CNT30504491Solanum tuberosumNicotiana attenuata82.9890.5191.84858forward
CNT30429024Solanum tuberosumPapaver somniferum55.3246.4782.52572forward

Expression of CNT3091768

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MPLDHQQGLMGQSFHLGRVGRQPHQEVHQQYGIPQRLPSTQLGKPKWPRCFVHGPSLGCPSSQVHPR*

>peptide 2 (68 aa)
MDQAWVAQVVKSTLAEDLGSSFEPYSLTKLDTVTGQELREDTSKSPKHSPSAVDHLKFTVLGKGFRVC*

Sequence

>CNT3091768
TTTTTTCCCCTTTGATATGAAACTGACGGTATTTTCATTCATGCCATTGGAAAGTAAAATTATAGACTACACTATAATTGGAATATAAGAAAAATCCATT
CTATTGTCTAGTAAACTCACAATTACAACTTTACAAGGCCATCAAACAATCATCATATTCTTTGAGAACGTTTTATGATATTCATTTTCCGGGAACAAAG
TTTGTGGCGAAGGCCCAGGCATTGTTGTTAACTGGATCTGCAAGGTGGTCCGCAAGGTTTTCCAATGGACCCTTTCCGGTAACAATAGCTTGAACAAAGA
ATCCGAACATAGAGAACATAGCAAGTCTGCCGTTTTTTATCTCCTTTACCTTGAGCTCAGCAAATGCCTCTGGATCATCAGCAAGGCCTAATGGGTCAAA
GCTTCCACCTGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTATCCCTCAACGGCTCCCATCAACACAACTTGGCAAGCCCAA
ATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAGATCTGGGATCCAGCTTTGAACCATACAGCCT
CACCAAACTTGACACCGTTACGGGCCAAGAGCTCAGGGAAGACACATCCAAGAGCCCCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCACGGTT
CTTGGCAAAGGTTTCAGGGTCTGCTGAAAGTCCAGCAGTATCCCAGCCGTAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGACTCACCAGAGAAT
GGGCCTAAGTACTTAACACGGTCTGGGCCATACCATGGGCTGCTAGATGAGGCAGATTTGGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGTGA
TTTCTGAGGCAGAGGGTGAGAGTTTCACTGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGAAGCTGCCATGGTTTATGTCAAGAGAAAAGT
AAGTGTTTGATGGTATGATATATTGTTGAAGTTG