Detailed information on CNT3076824


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZVF3|ML328_ARATH, E-value = 3e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373593Brassica junceaArabidopsis thaliana49.9135.8688.68265forward
CNT30234302Brassica junceaBrassica oleracea13.3731.9892.9671forward
CNT30312005Brassica junceaCamelina sativa20.3418.4986.11108forward
CNT3062249Brassica junceaArabidopsis lyrata33.926.3987.78180forward
CNT30612636Brassica junceaArabis alpina34.0971.2686.74181forward
CNT30478444Brassica junceaArabidopsis halleri34.4667.5389.07183forward

Expression of CNT3076824

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MRVPIAFEDCDTLDVMAYGVWKAVVLTLPPFVVFLC*

>peptide 2 (45 aa)
AVIVINQTIQGLHYYIDFNKRKTPTQHTEEAGDDVLKDKEVLFKL*

Sequence

>CNT3076824
GCAGTAATAGTAATTAACCAAACCATACAAGGGCTCCATTATTATATTGATTTCAACAAACGAAAGACACCCACACAACACACAGAGGAAGCCGGTGATG
ATGTTTTGAAAGATAAAGAGGTTTTATTTAAGCTTTGAGGACGTGGTTGTCCATATCAGCAACCATGCTCGTGACCAACTTCATGTAGTTAATGGGCTCA
GCTTAAGAGTCTCCATCACGTGGCCTTCAAGACCTCTGACCGTGACCGCATTATTCTCATCGTCTATCTCTCTCCTCTCCTTAAACACTTCCGTTCCAAA
TCTTGATGGATCCATGAGAGTCCCAATCGCCTTCGAGGACTGTGACACCTTGGATGTGATGGCCTATGGCGTCTGGAAAGCGGTGGTTCTCACTCTTCCA
CCTTTTGTAGTGTTTCTCTGCTGATCCTTTCAACGGAACCTCTGTTACATATGTTCCTGACGTCGCCATCTCTCTGTCTGTCTCTTCTAATTTGTGTTGT
GACTTGTGAGTAAACTGTGTGTTTTTTGTTG