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Detailed information on CNT30373593


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZVF3|ML328_ARATH, E-value = 8e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30234302Arabidopsis thalianaBrassica oleracea12.5841.8992.4793forward
CNT30312005Arabidopsis thalianaCamelina sativa33.6942.6481.93249forward
CNT3062249Arabidopsis thalianaArabidopsis lyrata24.3626.3995180forward
CNT3076824Arabidopsis thalianaBrassica juncea35.8649.9188.68265forward
CNT30612636Arabidopsis thalianaArabis alpina24.4971.2690.06181forward
CNT30478444Arabidopsis thalianaArabidopsis halleri24.7667.5398.36183forward

Expression of CNT30373593

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MGVPFTVVDGDTLDVVADGVGEEVVLTPPPLVVFLSRSFQWNLRHICS*

>peptide 2 (34 aa)
MAPWESHSPSWMVTPWMWWPMASGKRWFSLLHRL*

Sequence

>CNT30373593
GGGCAGTATTGATTGATAACTCTTGAAAATCATTAATTAACAAGGATACATGCGTAGATGAGCATACATGAAACCTCAACCATAATAAACAACATCAAAG
CATATTATAGTAGATGAAACCATACATGTAAACCCCCATTTATTATATTGAAAACACCATAAAAACGATACACACACACACACACAAAAGGAGCAATGTA
CGTATGAGGGTGATGATGATCATGATATTAGGTGATGATGGGTTGATGTGAAAGGGATATTTAGGCTTTGAGAACGTGATCATCCATGTCAGCAGCGAGG
CTCTTGACGAACTTCATGTAGTTGCTGGGCTCAGGCATGTCATCGTTTTGCTTCTCCCAGATCATAGTGATCTTACAGATGATATCATCAGGTGACTTTT
GAATGAACTGAAAGATGACGTCATACACTTTAAGCTGCTCCATCACGTGACCTTCGAGTCCTCTGAACGTTACCGCCATATTCTCATCGTCTATCTCTCT
CCTCTCCTTGAACACCTCCGTTCCAAATCTTGATGGCTCCATGGGAGTCCCATTCACCGTCGTGGATGGTGACACCTTGGATGTGGTGGCCGATGGCGTC
GGGGAAGAGGTGGTTCTCACTCCTCCACCGCTTGTAGTGTTTCTCAGCCGATCCTTTCAATGGAACCTCCGTCACATATGTTCCTGACGTCGCCATCTCT
CTTCCTTGTGTAGCGAGTGAAGTGTGTTTTTTGTTTGTT