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Detailed information on CNT30224983


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 5e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695986Hordeum vulgareOryza sativa39.0225.4395.8238forward
CNT30673431Hordeum vulgareSetaria viridis31.6457.9696.37193forward
CNT30522718Hordeum vulgareSetaria italica34.5928.6394.79211forward
CNT30188029Hordeum vulgareSecale cereale56.2349.7197.08343forward
CNT30300806Hordeum vulgareTriticum aestivum42.4631.798.07259forward
CNT30393906Hordeum vulgareTriticum turgidum57.5448.8298.01351forward
CNT30589400Hordeum vulgareMusa acuminata38.6934.592.37236forward
CNT30441097Hordeum vulgareAegilops tauschii42.4643.5398.46259forward
CNT30250314Hordeum vulgareAvena sativa55.2551.6989.91337forward
CNT30664919Hordeum vulgareTriticum dicoccoides57.5447.6395.44351forward
CNT30129910Hordeum vulgareCorymbia citriodora39.1837.9493.31239forward
CNT30685532Hordeum vulgareTriticum urartu42.4627.6197.3259forward
CNT30722028Hordeum vulgareTriticum spelta57.5444.6698.29351forward
CNT30345523Hordeum vulgareEragrostis tef39.3426.6494.58240forward
CNT30596886Hordeum vulgareOryza meridionalis39.1823.4895.4239forward
CNT30371011Hordeum vulgareOryza glumipatula33.9331.8597.1207forward
CNT30108138Hordeum vulgareOryza longistaminata33.6125.3196.59205forward
CNT30149001Hordeum vulgareBrachypodium distachyon35.4152.392.59216forward
CNT30117588Hordeum vulgareOryza nivara39.0219.7295.8238forward
CNT30603531Hordeum vulgareOryza punctata39.1821.9394.98239forward

Expression of CNT30224983

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MAWTKKPNMENMARRPFLISFTLSSAKASGSSARPRGSKLPPG*

Sequence

>CNT30224983
TTCCAGAAAAAATTTCAGAGAGCTTCTGTATTTGACATTCAGAGGTTGAGAGAAACAAGTAATTAAGCGGAAGAAGAAAGATGCCTTGATTAATCTGAAA
AATAACCAGATATTACACAAACACCATCTTTTTAGTGTACACACACCAACTCATCATCTCGACTCGCCCTCACATGCAAAATCTATCAGTCCGGAAAGAC
ATGCAGCACAGCAGCATCCATCAGCAATGAAGTTGTCGGCCAAGCGCGCGCGCGCGCGCTAGAGGTTGAGCTGACTGAGCTCACTTGCCGGGAACGAAGT
TGGTGGCGAAAGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAA
GCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCGGCGAAGGCCTCGGGGTCCTCGGCGAGGCCCAGGGGGTCGAAG
CTGCCGCCGGGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCTGGACGCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCT
CGCCGAAGGG