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Detailed information on CNT3053086


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30709121Amborella trichopodaGlycine max12.7820.287.6581forward
CNT30564261Amborella trichopodaActinidia chinensis12.7828.8393.8381forward
CNT30590647Amborella trichopodaMusa acuminata12.1524.6885.7177forward
CNT30721910Amborella trichopodaTriticum spelta12.326.1784.6278forward
CNT30353803Amborella trichopodaEragrostis tef12.6233.7686.2580reverse complement
CNT30369801Amborella trichopodaOryza glumipatula14.3521.4685.7191reverse complement
CNT30148504Amborella trichopodaBrachypodium distachyon18.6145.9184.75118forward
CNT30594327Amborella trichopodaEragrostis curvula11.6720.986.4974forward

Expression of CNT3053086

Peptides detected in this lncRNA

>peptide 1 (40 aa)
AKNHKRCVGNRWKFWTQVKLNSSLQITIITIYSSNKQLTK*

>peptide 2 (29 aa)
MQKKKHTIESRSRKQYHRQKDPRPRFTSS*

Sequence

>CNT3053086
AGCCAAAAATCACAAGAGATGCGTAGGCAACAGGTGGAAATTCTGGACCCAAGTCAAACTTAACTCATCACTTCAAATCACCATAATCACAATCTATTCT
TCAAATAAACAACTAACAAAATAGACTCGTACATATTCCATGTCCCGGACAAAAAGATAAATAGAGTGCAAAATGTCTTCTTTTTGTTTTTACTATAGCG
AAAAAGAAGGGGGAAGAAGAAAACCTCCCTAATCAGCACGCCACCGCCTGTCTAGCACCCAGTTCTGCATTGTCCGCCCGCCAAATAACAGCAACAAACC
AAAACACAGAACAAAATAACGAAAACATAAAGGAAATGCAAAAGAAGAAACACACGATAGAGTCCAGAAGCAGAAAACAGTATCACCGACAAAAGGACCC
AAGACCTCGGTTCACTTCTTCTTAGCAGCTGACTTGGTCACCTTGGCACCACTTGGGTCCTTCTTCTCAACAGCCTTGATCACACCAACAGCCACGGTTT
GCCTCATGTCCCTGACAGCAAACCTACCAAGAGGTGACCAGTGGTTGTTGATTTGCCAGAGTCCACATGACCAATAACCACAATGTTGATGTGAACCTTC
TCCTTACCCATCTTTCAGTTTTCAACTAAAGCCT