Detailed information on CNT30654380


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SB52|PUMP4_ARATH, E-value = 6e-94

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546427Rosa chinensisIpomoea triloba1130.5682.58132forward
CNT30616300Rosa chinensisSesamum indicum21.9218.1982.51263forward
CNT30160456Rosa chinensisPistacia vera20.6721.283.47248forward
CNT30568460Rosa chinensisActinidia chinensis22.0831.179.62265forward
CNT30588133Rosa chinensisMusa acuminata22.9234.1680.36275forward
CNT30209793Rosa chinensisHelianthus annuus9.520.2583.33114forward
CNT30706621Rosa chinensisPrunus avium8.5822.6988.35103forward
CNT30330081Rosa chinensisDioscorea rotundata8.525.1290.2102forward
CNT30726058Rosa chinensisLupinus angustifolius2024.0783.33240forward
CNT3050712Rosa chinensisCucumis sativus11.2565.2281.48135forward

Expression of CNT30654380

Peptides detected in this lncRNA

>peptide 1 (30 aa)
LAQNNNSKLLENLPELFKSHKQHHSERPLP*

>peptide 2 (96 aa)
MGPSAFTVFRAQSNAPVYGGSLPASTFMFITLVLITSTGFDATEATNPAAKLAVTCVPSPSAITCLSRIASLIWSYDASCDAVTIMASNPFLLRHP*

>peptide 3 (42 aa)
MATSAGFPTAAPTPPAMSPAMSFCPRGRFPDSGSDHLVLRMS*

>peptide 4 (75 aa)
MVADPEWEWKAKAGRRAWMGCWAGAGRPFSPWSCIRTLMRSKGWVEQPATMEAIPPSTKPLTPISILEEKIEAFE*

Sequence

>CNT30654380
ATTAGCTCAAAACAATAACTCAAAACTCCTTGAAAACCTTCCTGAGTTGTTCAAGAGTCACAAACAGCACCACAGTGAAAGGCCCCTGCCTTGAAATTGT
AGGAATGAAACCCTTGTAGAGGGCCATGGGTCCTTCAGCCTTCACCGTCTTCAGGGCACAATCCAATGCCCCGGTGTACGGCGGCTCCCTCCCGGCCTCC
ACCTTCATGTTCATCACCCTAGTCTTGATCACGTCCACCGGGTTCGACGCCACCGAGGCGACGAACCCCGCCGCGAAACTCGCTGTCACGTGCGTGCCGA
GCCCGTCGGCCATCACGTGCCTCTCGAGAATCGCCTCCTTGATCTGGTCGTACGACGCCAGCTGCGACGCCGTCACGATCATGGCTAGTAACCCCTTCCT
GCTTCGCCATCCTTGAGATGGCGTCGACCACGTTCTTGTAGTTCCGGCGCTGCGCCTCCGGGAGCCGGCCGTCGGCCTGCATCCTCACCATGGCAACGTC
GGCGGGGTTCCCAACCGCGGCGCCGACACCGCCGGCGATGAGTCCGGCGATGAGCTTTTGCCCCAGAGGAAGGTTCCCGGATTCCGGGTCGGACCACTTG
GTCTTGAGGATGTCGTAGAGACCCATCCGGGTGGTGGAGTAGAGAGTCTGGCGGAGCACGGTGGCGGAGACGCCGGAGAACAAGGCTTTGACGCCTTCGG
TCTGGAAGATCTTGACTCCGACGGAGATCGGGCCGGCACGCGGCGGAGCGGCCACCACGTGCGGCGGAGGAGCCATCATGGTTGCGGATCCAGAATGGGA
ATGGAAGGCGAAAGCTGGGCGAAGAGCGTGGATGGGCTGCTGGGCCGGGGCGGGTAGGCCCTTTTCGCCCTGGAGCTGCATTCGGACCTTGATGAGATCC
AAAGGGTGGGTGGAGCAGCCGGCGACGATGGAAGCTATACCTCCCTCAACGAAACCTTTGACACCCATTTCGATATTGGAAGAAAAGATAGAAGCTTTTG
AGTAGTATTGGGCAGTTAAAAAAAGAATGAAAGAATGGTTTTTTTTTTTGTTGAAGTTTTAAAGAAGCAAAATTTGTGTGCCAAAAAATGGAGGTGTTAG
GGGAAAAAATTAGGAATGGAAGAATTAAGCCCAGTTGGAGGAGGAGTGAGGGACGTTGGGCCTCTGAGACATAAGCTGGCTCTCTCTGTTGTGAATTGAG