Detailed information on CNT30702494


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30304182Quercus lobataTriticum aestivum37.9938.2485.43405reverse complement
CNT30596430Quercus lobataOryza meridionalis18.4823.8287.31197reverse complement
CNT30104319Quercus lobataOryza rufipogon37.9936.5583.7405reverse complement
CNT30333539Quercus lobataCynara cardunculus12.4836.3489.47133forward
CNT30723871Quercus lobataLupinus angustifolius36.598.2191.54390reverse complement

Expression of CNT30702494

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MCYNAEPRTLRPIYRSSQLSSERISSLVMAQSIDR*

>peptide 2 (63 aa)
MTQRYLHRPIHGMTQRHLHRPILCLFPDPTQQTDPLFTSPWPNNYVGRQCNRPSPSRPAHSGD*

>peptide 3 (69 aa)
MAQQLCRSAMQPTQPVETSPQWRLSEVELSTCFLIIRPLFPECSPLQPLFHLPKSKVGLTSTDVRKREQ*

>peptide 4 (85 aa)
MSVGNATDPARRDQPTVEIERGGVINLLPDNQATFSGMQSTSTTVSPPKKQSWLDEHRCEEAGAIKPKISFLSFYLRGKEKRFCY*

>peptide 5 (38 aa)
NYLPPTRLPSLLTLCNYLPPTRKPSLLTLCHYLPPTQK*

>peptide 6 (32 aa)
MKKNQTFMVQWIFSFCVCDEEVAIYVYSVMGW*

>peptide 7 (40 aa)
LPSSHTTAFSFDTLQLPSSHTKAFSFDALPLPSSHTKIKH*

Sequence

>CNT30702494
AATTACCTTCCTCCCACACGACTGCCTTCTCTTTTGACACTCTGCAATTACCTTCCTCCCACACGAAAGCCTTCTCTTTTGACGCTCTGCCATTACCTTC
CTCCCACACAAAAATAAAACACTGATTCTCTGCCATTTCCTTTCCACGGCAAGACCCAACAGATCGATCCTCTGCCTCTTCCCCGATCTGACCCAACAGA
CTGATCCTCTGCCTCTTCCCCGATCCGACCCAACAGACCGATCCTTTGCTTCTTCCTTTCCACAGCATGACCCAACGATACCTTCATAGACCGATCCACG
GCATGACCCAACGACACCTTCACAGACCGATCCTCTGCCTCTTCCCCGATCCGACCCAACAGACCGACCCACTCTTCACCAGCCCATGGCCCAACAACTA
TGTCGGTCGGCAATGCAACCGACCCAGCCCGTCGAGACCAGCCCACAGTGGAGATTGAGCGAGGTGGAGTTATCAACTTGCTTCCTGATAATCAGGCCAC
TTTTTCCGGAATGCAGTCCACTTCAACCACTGTTTCACCTCCCAAAAAGCAAAGTTGGCTTGACGAGCACAGATGTGAGGAAGCGGGAGCAATAAAACCA
AAAATCTCTTTCTTGTCCTTCTACTTAAGGGGCAAAGAGAAACGCTTTTGCTACTGAGAAAGCGAACGGTCAGCACGAAGGTTCAAGACTTAGCCGAGCA
TTAGTGAAGCTAGATTCTCATAGCGAGGCGCTTCGAGTTAGCGAAGCGCTGTAGTAGCATCGAAGCCCTATGTGCTATAACGCTGAGCCAAGGACGCTTC
GCCCTATCTATAGAAGCAGTCAACTAAGTTCTGAACGAATTAGCTCCTTGGTAATGGCTCAATCTATAGATAGATAGCCCTATGATGGGAAACTACCACG
TTCTATTTTCATATTACTTTTAAATTGTGTTTGTGATGAAGAAGAACCAGACATTCATGGTGCAATGGATTTTTTCATTTTGCGTTTGTGATGAAGAAGT
TGCTATATATGTCTACAGTGTAATGGGGTGGTAGAATATTGCTTATTGTAATGGGGTGTAATGGGC