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Detailed information on CNT30104319


BLAST search results

BLAST vs Swiss-Prot:
sp|P93306|NDUS2_ARATH, E-value = 1e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30702494Oryza rufipogonQuercus lobata36.5537.9983.7405reverse complement
CNT30304182Oryza rufipogonTriticum aestivum67.9671.196.02753forward
CNT30592658Oryza rufipogonMusa acuminata30.7815.5894.13341forward
CNT30231904Oryza rufipogonAnanas comosus23.9231.4789.43265reverse complement
CNT30596430Oryza rufipogonOryza meridionalis56.9576.399.84631forward
CNT30333539Oryza rufipogonCynara cardunculus7.7623.593.0286reverse complement
CNT30723871Oryza rufipogonLupinus angustifolius83.1219.487.19921forward
CNT3039551Oryza rufipogonMarchantia polymorpha7.8525.3683.9187forward

Expression of CNT30104319

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MGKARCSYFTTVGTITPITDKKDTKFTFRCFNCGIGRRSWYGKTFCIKFEMVN*

>peptide 2 (47 aa)
LARNKARVLIEQDYVLSIYLSKHNILSTYDGDYICWHVMFGHRIESL*

>peptide 3 (69 aa)
MTASKISIYTGTLIPDCVPEKVAYLTERAGTLGSEVGTLVFQPHRHFEFSGALFTYSLYELQVNGAGAW*

Sequence

>CNT30104319
TTTTGGCTCGCAATAAAGCTAGGGTCCTGATCGAGCAAGACTACGTCCTATCTATCTACCTCTCCAAACACAATATCTTGAGTACCTATGATGGTGACTA
CATCTGCTGGCATGTGATGTTTGGACATAGAATCGAGTCCTTGTGAATGGGCAAAGCCAGGTGCTCTTATTTTACAACGGTAGGGACGATTACTCCCATT
ACTGACAAGAAAGACACCAAATTCACCTTTAGGTGCTTCAACTGCGGTATAGGTAGAAGGAGCTGGTACGGAAAAACCTTCTGTATAAAGTTCGAAATGG
TGAATTGAGGTAGAGTAGACCGATGATCCGGTAGTCATTTGGCCGGCTATGGAAAGAAAAAGCTTGCATCTGCTCCCCTTAAACTATAACAGGTCCCATC
TCTCTCCAAACCTAACGTGGTAGTTTCCCATCATAAGGCTTTCCATCTATAGATTGATTGAGCCATTACCCACCAAGGATCCCATTCGTTCAGAACTCAG
TTGACTGCTTCTATAGATAAGGCGGAACGTCCTTAGTTCAGCATTATAGCACATAGTCTCCGACGCTACTACAGCGCTTCGCTAACTCGAAGCGCCTCGC
TATGAGAATGACGCTTCGCTAACGCTCGGCTAAGTCGTCGAACCCTCGCGCTGACCATTCACTTTCTCAGTAGCAAAAGCGCTTCTCTTTGCCCCTTAAC
TTAATAAAGTATTTGGAAAAGAAAGAGATTCTTGGTTTTATTGCTCCTCATCTGCGCTCGTCAAGCCAACTTAGCTTTTTGGGAGGTGAAAGAGGGGTTG
AAGCGGACATTTCGAAATGACAGCATCGAAGATATCTATATACACAGGAACGCTTATTCCGGACTGCGTTCCGGAAAAAGTAGCCTACTTGACAGAAAGG
GCGGGCACTCTCGGCTCGGAGGTAGGCACTCTCGTCTTTCAACCCCACCGTCACTTTGAATTTAGTGGGGCACTGTTTACTTACAGCCTCTACGAGTTGC
AAGTGAATGGGGCCGGTGCGTGGTGAACGGAAGGGTTCATCAAGCCATTTCTCGCCTTAACCCCTAAACAAAATAGGAAGAGGGGTACTTGACTAATAGG
GGGCAATT