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Detailed information on CNT30596430


BLAST search results

BLAST vs Swiss-Prot:
sp|P93306|NDUS2_ARATH, E-value = 1e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30702494Oryza meridionalisQuercus lobata23.8218.4887.31197reverse complement
CNT30289018Oryza meridionalisTriticum aestivum35.43101.3896.93293reverse complement
CNT30592658Oryza meridionalisMusa acuminata41.2315.5894.13341forward
CNT30484721Oryza meridionalisChara braunii26.3617.482.57218forward
CNT30104319Oryza meridionalisOryza rufipogon76.356.9599.84631forward
CNT30723871Oryza meridionalisLupinus angustifolius77.1513.4491.69638forward
CNT3039551Oryza meridionalisMarchantia polymorpha10.5225.3683.9187forward

Expression of CNT30596430

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MGKARCSYFTTVGTITPITDKKDTKFTFRCFNCGIGRRSWYGKTFCIKFEMVN*

>peptide 2 (36 aa)
GGRELKWMALLSPERLKLRHGFTWHTCFLSGCFGSQ*

>peptide 3 (55 aa)
MALHGTLAFFQAVLARNKARVLIEQDYVLSIYLSKHNILSTYDXXXFWLAIKLGS*

Sequence

>CNT30596430
GGAGGGCGAGAGTTGAAGTGGATGGCCCTTCTATCACCTGAAAGGCTGAAACTCAGGCATGGCTTTACATGGCACACTTGCTTTCTTTCAGGCTGTTTTG
GCTCGCAATAAAGCTAGGGTCCTGATCGAGCAAGACTACGTCCTATCTATCTACCTCTCCAAACACAATATCTTGAGTACCTATGATGNNNNNNTGTTTT
GGCTCGCAATAAAGCTAGGGTCCTGATCGAGCAAGACTACGTCCTATCTATCTACCTCTCCAAACACAATATCTTGAGTACCTATGATGGTGACTACATC
TGCTGGCATGTGATGTTTGGACATAGAATCGAGTCCTTGTGAATGGGCAAAGCCAGGTGCTCTTATTTTACAACGGTAGGGACGATTACTCCCATTACTG
ACAAGAAAGACACCAAATTCACCTTTAGGTGCTTCAACTGCGGTATAGGTAGAAGGAGCTGGTACGGAAAAACCTTCTGTATAAAGTTCGAAATGGTGAA
TTGAGGTAGAGTAGACCGATGATCCGGTAGTCATTTGGCCGGCTATGGAAAGAAAAAGCTTGCATCTGCTCCCCTTAAACTATAACAGGTCCCATCTCTC
TCCAAACCTAACGTGGTAGTTTCCCATCATAAGGCTTTCCATCTATAGATTGATTGAGCCATTACCCACCAAGGATCCCATTCGTTCAGAACTCAGTTGA
CTGCTTCTATAGATAAGGCGGAACGTCCTTAGTTCAGCATTATAGCACATAGTCTCCGACGCTACTACAGCGCTTCGCTAACTCGAAGCGCCTCGCTATG
AGAATGACGCTTCGCTAACGCTTGGCT