Detailed information on CNT30673091


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40723|RLGP2_ORYSJ, E-value = 4e-58

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692241Setaria viridisOryza sativa43.825.8282.53166forward
CNT30689504Setaria viridisTriticum urartu31.937.6685.12121forward

Expression of CNT30673091

Peptides detected in this lncRNA

>peptide 1 (43 aa)
YNMMSEARLYILSRAACPLGVSRSAVNADGLSLGRLPPRLQPP*

>peptide 2 (34 aa)
MFPGRITLPFLPTLCLHPQRWLSSVSGQICCRPS*

>peptide 3 (31 aa)
MALKCVRSDLLPTIMITMLESAWSRSSRSHL*

Sequence

>CNT30673091
CTATAATATGATGTCTGAAGCCCGATTATACATTTTAAGTAGAGCAGCATGCCCTCTTGGTGTTTCCAGAAGTGCTGTCAATGCTGATGGTCTTTCCCTG
GGAAGGCTTCCTCCACGTTTACAGCCTCCATAGCTGATGTTTCCAGGAAGAATAACCCTTCCTTTTCTGCCAACGCTTTGCCTTCATCCTCAGAGATGGC
TCTCAAGTGTGTCAGGTCAGATTTGTTGCCGACCATCATGATTACGATGCTGGAGTCCGCATGGTCACGGAGCTCACGAAGCCACCTGTGAACATTGTCG
AAGCTCTGCCTCTTTGTGATGTCATATACAAGTAGGGCTCCCACAGCCCCGCGGTAGTATGCACTTGTAATGGCACGGT