Detailed information on CNT30689504


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40193|RB11C_LOTJA, E-value = 1e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692241Triticum urartuOryza sativa14.3835.381.94227forward
CNT30673091Triticum urartuSetaria viridis7.6631.9385.12121forward
CNT30178437Triticum urartuSecale cereale6.2737.7993.9499forward

Expression of CNT30689504

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MDVSRTKIRLDTSIPPTSISGRREYLGNGGSTKDFLFVSRKRNVKIQ*

>peptide 2 (48 aa)
GDLGQTNPKEHTCVVPRNSSSHAKHATPSIPKYSLYRFHYGPHTEQNE*

>peptide 3 (31 aa)
MFDFSIVQVKSMIVLRIQNENDLMEAGYRVW*

>peptide 4 (34 aa)
MSQGTTDLLSQRMLGCLPQEPIVSGLSLTCSQPS*

>peptide 5 (35 aa)
MECLLHIDCLQCRCLKERQTFCLRECLAVFLRNRS*

>peptide 6 (52 aa)
EISDKQTRRNTHVLCRGIAHLMQNMLLPPFLNTLCTDFTMGHIRSKMSESTL*

>peptide 7 (68 aa)
MYIVMVQFCGSRHFREESLPLEPALQLEQQEPFALADDSATLIVVPCIERLLAAADSCAASAFLLTIW*

Sequence

>CNT30689504
AGGAGATCTCGGACAAACAAACCCGAAGGAACACACATGTGTTGTGCCGAGGAATAGCTCATCTCATGCAAAACATGCTACTCCCTCCATTCCTAAATAC
TCTTTGTACAGATTTCACTATGGGCCACATACGGAGCAAAATGAGTGAATCTACGCTCTAAAATGCATCTATATACATCCGTATGTGGTCCATAATGGAA
TCTCTACAAAGACTTGTAATCCTTCCGTCCTGAAATACTTGTCAAAGAAATACATAAAAATGGATGTATCTAGAACTAAAATACGTCTAGATACATCCAT
TCCCCCGACAAGTATTTCTGGACGGAGGGAGTATTTAGGAAACGGAGGGAGTACAAAAGACTTCTTGTTCGTTTCAAGGAAAAGAAACGTGAAAATTCAA
TAAATTACCATCATGCTGGAAAAATGAATACAGGTCCAGCAATAAGACACATCATGAAATAACTAATGGTCAGAGGCACAGCCAGAATGATTCATGGGAA
TGCATTTAGAGCAATTCAAAAGAGAATTGATGAATAATACTATTTGAATCGAAGAAGGGTAAATAATTTCTCAAACATCAAGCCTGCGAAAAAAAAGTGC
TCGCTCAGTCATATGATCAGGTCTACCAACATCGGCAGCGCACTTCTTGCCATTATAACGAAATTTAAGAGCATATAATAATTCCATTAACAATTATTAT
TGTTGTTAACAGGAAATAATCATTGTTACAACATGTTCGATTTCTCAATTGTACAAGTGAAATCGATGATAGTTTTAAGAATACAAAATGAGAATGATTT
GATGGAGGCAGGTTATAGAGTATGGTAAAGGTGTTCTTGCGATAGGAATTACCAGTCATGGGATTCGGGATGAGAAACAAGAATATCTGAGACCAAACTA
TAACCTATGTATATTGTCATGGTCCAGTTCTGCGGAAGCAGACATTTCCGGGAAGAATCTCTTCCACTGGAACCAGCTCTTCAACTGGAACAGCAAGAAC
CTTTTGCGTTGGCGGATGATTCAGCAACGTTAATAGTCGTTCCTTGCATTGAACGGCTGTTGGCAGCAGCAGACTCCTGTGCTGCAAGTGCTTTTTTGCT
TACAATCTGGTGAATTTCACTCAGCACAGTATGGAATGCCTTCTCCACATTGATTGCCTCCAGTGCAGATGTCTCAAGGAACGACAGACCTTCTGTCTCA
GAGAATGCTTGGCTGTCTTCCTCAGGAACCGATCGTAAGTGGTTTAAGTCTGACTTGTTCCCAACCATCATGACAACAATGTTGGCATCTGCATGATCCC
GGAGCTCACGGAGCCACCTCTGAACATTGTCGAAGGTCTGCCTCTTTGTTATGTCAAAGACTAGGAGTGCTCCAACAGCACCCCTGTAATATGCACTAGT
AATTGCACGGTATCTCTCCTGACCAGCCGTGTCCCATATCTGTGCCTTCACAGTCTTTCCTTCTATCTGCCGCAAAACCAAATTAAACTTCTGCTGAGCT
TCACTAGAAGAATATGTATTTAACACGGGTATAGAACACCAATAGGAAAGGAGTATTATTCCAGTGCTAAACTCACCAC