« Back to Oryza sativa search


Detailed information on CNT30691157


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678058Oryza sativaSetaria viridis8.3524.8189.2365forward
CNT30106366Oryza sativaOryza longistaminata8.6121.6194.0367forward
CNT30115994Oryza sativaOryza nivara51.2955.4299.75399forward

Expression of CNT30691157

Peptides detected in this lncRNA

>peptide 1 (51 aa)
LKLQTKALLEVGTGTQASTGPYNKCARTDSGNKSTTKKTKERVQRESKLVP*

>peptide 2 (35 aa)
MHDRSCVALHAKYVRNVVANKQSSKQIKSRVVKAN*

>peptide 3 (35 aa)
MRLRSMGRGTPPPRGRRAPPAAGSTAPPEARPPWP*

Sequence

>CNT30691157
CTGAAGTTGCAAACCAAAGCTTTATTAGAAGTTGGTACCGGCACACAAGCTAGCACCGGCCCTTACAACAAATGCGCACGTACGGATAGCGGGAATAAGA
GTACTACAAAGAAGACAAAGGAGAGAGTACAGAGAGAATCCAAACTGGTACCGTGATACGTACAAACAGCCAGCATGCACGATCGATCATGCGTTGCGTT
GCATGCAAAGTACGTACGTAACGTAGTAGCAAATAAACAGAGCAGCAAGCAAATCAAATCAAGAGTCGTCAAAGCCAACTAATCACCGTACGTAGGATCA
ACCCATGCAGGCATTGCATATGCACGCTGCTTAGCACTTGAAGCCGGTGGGGACGGTCTTGCCGCAGTAGTTGAGGATGAGGCTGAGGTCGATGGGGAGA
GGCACACCGCCGCCTCGAGGTCGACGAGCCCCTCCAGCAGCGGGCAGCACGGCTCCGCCGGAGGCACGCCCACCTTGGCCTTGATCAGGCCCAGCACGTT
GGCGCACACGCCCAGCTTCAGCGCGTCGCGGGGGCACCTCCCGAACGCCGACGGCGTCGGCGTCGGCGTTGACGGTGTCGGGGTCGACGGCGTCGGCGTC
GGGCACGACGGGCTGCCGCCGCAGGCGCTTGCCACCCCGAGCACGACGAGGTTCACGGCCAGGAACAGAGCGAACGCCTTGGACGCCATTGCTACGTACC
CGAGATCGATCGATCACAAGCGCAGCTAATCACTAGCTAGCTAATTAAGAGCTCTTGATCAGCTGGAGATGATTAGGC