Detailed information on CNT30115994


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691157Oryza nivaraOryza sativa55.4251.2999.75399forward
CNT30676135Oryza nivaraSetaria viridis15.9730.5993.04115forward
CNT30187285Oryza nivaraSecale cereale15.9731.0887.83115forward
CNT30365845Oryza nivaraSorghum bicolor15.8324.2692.98114forward
CNT30595677Oryza nivaraOryza meridionalis42.3649.4396.72305forward
CNT30369534Oryza nivaraOryza glumipatula53.6163.1899.48386forward
CNT30106366Oryza nivaraOryza longistaminata11.1125.819580forward

Expression of CNT30115994

Peptides detected in this lncRNA

>peptide 1 (52 aa)
YLKLQTKALLEVGTGTQASTGPYNKCARTDSGNKSTTKKTKERVQRESKLVP*

>peptide 2 (35 aa)
MHDRSCVALHAKYVRNVVANKQSSKQIKPRVVKAN*

>peptide 3 (58 aa)
MRLRSMGRLRLMPRMLPLMAVQRHAHLGLDQAQHVGAHAQLQRVAGAPPERRRRRRRR*

Sequence

>CNT30115994
ATATCTGAAGTTGCAAACCAAAGCTTTATTAGAAGTTGGTACCGGCACACAAGCTAGCACCGGCCCTTACAACAAATGCGCACGTACGGATAGCGGGAAT
AAGAGTACTACAAAGAAGACAAAGGAGAGAGTACAGAGAGAATCCAAACTGGTACCGTGATACGTACAAACAGCCAGCATGCACGATCGATCATGCGTTG
CGTTGCATGCAAAGTACGTACGTAACGTAGTAGCAAATAAACAGAGCAGCAAGCAAATCAAACCAAGAGTCGTCAAAGCCAACTAATCACCGTACGTAGG
ATCAACCCATGCAGGCATTGCATATGCACGCTGCTTAGCACTTGAAGCCGGTGGGGACGGTCTTGCCGCAGTAGTTGAGGATGAGGCTGAGGTCGATGGG
GAGGTTGAGGTTGATGCCGAGGATGTTGCCCCTGATGGCCGTGCAGAGGCACGCCCACCTTGGCCTTGATCAGGCCCAGCACGTTGGCGCACACGCCCAG
CTTCAGCGCGTCGCGGGGGCACCTCCCGAACGCCGACGGCGTCGGCGTCGGCGTTGACGGTGTCGGGGTTCACGGCCAGGAACAGAGCGAACGCCTTGGA
CGCCATTGCTACGTACCCGAGATCGATCGATCACAAGCGCAGCTAATCACTAGCTAGCTAATTAAGAGCTCTTGATCAGCTAGAGATGATTAGGCTGCTT
GAGATGGTTTTGATCATGGG