Detailed information on CNT30106366


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691157Oryza longistaminataOryza sativa21.618.6194.0367forward
CNT30678058Oryza longistaminataSetaria viridis24.8429.3990.9177forward
CNT30187285Oryza longistaminataSecale cereale25.4821.3588.6179forward
CNT30439196Oryza longistaminataAegilops tauschii23.2317.5686.1172forward
CNT30365845Oryza longistaminataSorghum bicolor27.4218.0992.9485forward
CNT30370079Oryza longistaminataOryza glumipatula99.3546.3999.35308forward
CNT30115994Oryza longistaminataOryza nivara25.8111.119580forward

Expression of CNT30106366

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MTSDNTLLARRNQINPCCVETCMDRSRGYFTKPLEALEAGGHALAAVVEDEAEVDGEVEVD

>peptide 2 (37 aa)
HVPRCIISRTRGEGHKLNKIISNQTRYVLLATKCTHA*

>peptide 3 (44 aa)
CTPMHNLAYARRRPQIKQNHIESNQIRTSCHQMHACMNMPMHDK*

Sequence

>CNT30106366
CATGTACCCCGATGCATAATCTCGCGTACGCGCGGAGAAGGCCACAAATTAAACAAAATCATATCGAATCAAACCAGATACGTACTTCTTGCCACCAAAT
GCACGCATGCATGAACATGCCCATGCATGACAAGTGACAACACGCTGCTAGCACGTAGGAACCAAATAAACCCCTGTTGCGTTGAGACGTGCATGGATCG
TTCGCGCGGCTACTTTACAAAGCCTTTAGAAGCACTTGAAGCCGGTGGGCACGCGCTTGCCGCAGTAGTTGAGGATGAGGCTGAGGTCGACGGGGAGGTT
GAGGTTGATG