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Detailed information on CNT30685554


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 3e-80

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522354Triticum urartuSetaria italica60.6139.2389.67397forward
CNT30298483Triticum urartuTriticum aestivum94.0599.5297.73616forward
CNT30142773Triticum urartuLolium perenne60.7642.9389.95398forward

Expression of CNT30685554

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MACTKKPNMENMARRPFLSSFTLSSAAVSGSSARPSGSKAPPGLGLPR*

>peptide 2 (71 aa)
MTHDSSIHSLVHTLCLINLHCAQLARGPLARSIMVQINTQSTCSYTLIHDVQVHMHISSDGRTDGRTAKHI*

>peptide 3 (38 aa)
MPFLDRISGNTHPRAPSIAHREWITSSSLFLANVSGSAD

Sequence

>CNT30685554
GATCTTGAGTAATGACACACGATTCTTCCATCCATTCCCTCGTGCACACCTTGTGCTTAATTAATTTACATTGCGCGCAGCTAGCGAGAGGACCTCTCGC
TCGCTCGATCATGGTACAAATAAACACACAAAGTACGTGCAGCTACACGTTGATCCACGACGTACAAGTACACATGCATATCTCGTCCGATGGACGGACG
GACGGACGGACGGCTAAACACATTTAGCTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACCGGGTCGGCGACGTGGTCGAAGAGGT
TCTCAACTGGCCCCTTCCCGGTGACGATGGCCTGCACGAAGAAACCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTC
GGCGGCGGTGTCGGGGTCGTCGGCGAGGCCAAGTGGGTCGAAGGCGCCGCCCGGGTTGGGGTTGCCCAGGTAGTCGAGGCCGCCCTCGGAGAAGATCTGG
GCGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGATGCCGTTCTTGGACAGGATCTCCGGGAACACGCACCCGAGGGCGCCGAGCATCGCCCACCGCG
AGTGGATCACCTCCAGCTCCCTGTTCTTGGCGAACGTCTCGGGGTCAGCAGACAA