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Detailed information on CNT30142773


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 2e-68

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30298483Lolium perenneTriticum aestivum55.4583.0486.19514forward
CNT30393445Lolium perenneTriticum turgidum55.9966.2887.48519forward
CNT30665660Lolium perenneTriticum dicoccoides54.4872.0488.32505forward
CNT30685554Lolium perenneTriticum urartu55.9979.2488.44519forward
CNT30116740Lolium perenneOryza nivara41.144.5186.09381forward

Expression of CNT30142773

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MIVQIITQSTCSYTLIHDVQVHMHISPGGRTDGYLI*

>peptide 2 (50 aa)
MGPLPVTMACTKKPNMENMARRPFLSSLTLSSAAVSGSSARPSGSKEPPG*

>peptide 3 (29 aa)
MIVPLLTFIHRRTLCLITLRTTSETGLAQ*

Sequence

>CNT30142773
ACGCAATTTCTACAAAAACATCACACGAGTATTCAGGAGATGTGTATGTATTCATAGAATAATTTTTTTGGTTATTTGAAACACACAGAAGTACAATTTT
CATATATTTCAAAAACTTGGAGCATAGGCGCTTGGATGCACCAAATCTTCTCTCGAGGGTAGGGGAACACTAGGGAGGGATGACTCAACTCCAAACTTAT
GTCTCAATGCGGTTGAAACCTACAAAATATATTGAAACCTGAGCCCAAGCATGTATAAATATTCTCCGTGTGCTAACCTCTGAGATCACGTTTCTTCCTT
CTAGCAACGATCCGGACTTAACTACTCTCTTCATTATAGATGATTGTTCCATTATTGACATTCATTCATCGGCGTACCTTGTGCTTAATTACATTGCGCA
CAACTAGCGAGACGGGACTCGCTCAATGATAGTACAAATAATAACACAAAGTACGTGCAGCTACACGTTGATCCACGACGTACAAGTACACATGCATATC
TCGCCCGGTGGTCGGACGGATGGCTATCTCATTTAACTTCCAGGAGCGAAGTTGGTGGCGAAAGCCCATGCGTTGTTGTTGACTGGGTCAGCAACGTGGT
CGAAGAGGTTTTCGATGGGTCCCTTGCCGGTGACGATGGCCTGTACAAAGAAACCGAACATGGAGAACATGGCGAGGCGGCCATTCTTGAGCTCCTTGAC
CTTGAGCTCGGCAGCGGTGTCGGGATCGTCGGCAAGGCCAAGTGGGTCAAAGGAGCCGCCTGGGTAGATCTTGTCGAGGTAGTCGAGACCGCCCTCAGAG
AAGATCTGAGCGCCGGCCTTGAACCACACGGCCTCACCGAACTTGATGCCGTTCTTGGACAGGATCTCTGGGAACACACACCCGAGTGCGCCAAGCATCG
CCCACCTCGAGTGGATCACCTCTAGCT