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Detailed information on CNT30684394


BLAST search results

BLAST vs Swiss-Prot:
sp|P27572|NU4M_WHEAT, E-value = 3e-84

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30537189Triticum urartuEucalyptus grandis22.4470.1990.41219forward
CNT30201076Triticum urartuPisum sativum22.2334.3994.47217reverse complement
CNT3043372Triticum urartuPrunus dulcis27.8746.0290.44272forward
CNT30104511Triticum urartuOryza rufipogon33.61100.3197.56328reverse complement

Expression of CNT30684394

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MSRSFNCPSETRSRSAMHGRPPRPFFLSVPPGWAPLG*

>peptide 2 (39 aa)
MVAPPVLSFSRSHQGGPLWGNKEMDKKGTSATGYATHYL*

>peptide 3 (56 aa)
MPPITYEGSRIRPIASTYNVMITLVYPFLVVQRTVAPPTRKGRNMETSLPFRSENL*

Sequence

>CNT30684394
TGACTGATATATAAGTATGATCTCGGACTACGAAGACCCAGTCGTGCTTCTGGTTTCCATTCTCATCATCATATTGAAGGAAACTCCTCGTGCTCTGCCA
TAAGAACTTGGAGTCCGTATCATGGTGAAGGTAAGGTAACGCTGTGATTCTTGCTCAAAAAACTGACCGAACACGTTCGAGTTATTGGCTCGTCCGACCC
GGCAGCATTCATGAGTCGCTCGTTCAACTGTCCCTCGGAGACACGGTCGAGAAGTGCCATGCATGGTCGCCCCCCCCGTCCTTTCTTTCTCTCGGTCCCA
CCAGGGTGGGCCCCTCTGGGGTAATAAAGAAATGGATAAAAAGGGGACTTCTGCTACGGGCTATGCCACCCATTACTTATGAGGGAAGTCGCATCCGTCC
CATCGCAAGCACCTACAATGTCATGATCACATTGGTTTACCCTTTTTTGGTAGTTCAACGGACGGTCGCCCCTCCAACAAGAAAAGGTAGAAATATGGAA
ACTTCTCTGCCATTTAGATCGGAGAATTTATAGAGGAAATCGGGTTTTAAATTTCCAGAAACCACACGATTATATAGCCAAAGGGAATACGCCGCGCCTA
AAATCATCCAAACTAATGTGGCTACTAAGCTATTTCTTTGGAAAGCTCCTACTAAGATTAGAAATTCCCCGATAAAGCTGCTAGTGCCGGGTAAACTCAT
ATTGGCTAAAGTGAAAAAGAAGAAAATGGTAGAGAAATTCGGCATGGTGCTCACTAAACCTCCATAATATCTAACAAGTCGAGTCTTATGTCGGTCATAT
AGAACACCAACACATAGAAAAAGGGCTGAAGAAACCAGTCCATGACTTAACATAAGTAAAATGCTACCTCCAATTCCCTGTATGTTCGATAGAGCCTAAT
ATTCCCCCAGAGTACGCCGCTTACCCCCCGAACCGTACAAGAAAGTTACCACCTATCATACGGCTTTCTAACTCCA