Detailed information on CNT30104511


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30537189Oryza rufipogonEucalyptus grandis19.2720.1988.8963reverse complement
CNT30201076Oryza rufipogonPisum sativum32.4216.890.57106forward
CNT3043372Oryza rufipogonPrunus dulcis54.4330.1290.45178reverse complement
CNT30226086Oryza rufipogonHordeum vulgare100.316.1797.26328reverse complement
CNT30684394Oryza rufipogonTriticum urartu100.3133.6197.56328reverse complement

Expression of CNT30104511

Peptides detected in this lncRNA

>peptide 1 (30 aa)
SKWQRSFHISTFSCWRGDRPLNYQKRGKPM*

>peptide 2 (59 aa)
MGGIARSRSPLFLSIFYYPRGARPGGTERKKGRGGATMHGTSRPCLRGTVERATHECVRV

Sequence

>CNT30104511
ATCTAAATGGCAGAGAAGTTTCCATATTTCTACCTTTTCTTGTTGGAGGGGCGACCGTCCGTTGAACTACCAAAAAAGGGGTAAACCAATGTGATCATGA
CATTGTAGGTGCTTGCGATGGGACGGATGCGACTTCCCTCATAAGTAATGGGTGGCATAGCCCGTAGCAGAAGTCCCCTTTTTTTATCCATTTTTTATTA
CCCCAGAGGGGCCCGCCCTGGTGGGACCGAGAGAAAGAAAGGACGGGGGGGGGCGACCATGCATGGCACTTCTCGACCGTGTCTCCGAGGGACAGTTGAA
CGAGCGACTCATGAATGCGTCCGGGTC