Detailed information on CNT30537189


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375396Eucalyptus grandisArabidopsis thaliana31.7319.7283.8499forward
CNT30501326Eucalyptus grandisCoffea canephora752.2191.03234forward
CNT30201076Eucalyptus grandisPisum sativum76.9238.0390.83240reverse complement
CNT3043372Eucalyptus grandisPrunus dulcis70.1937.0686.3219forward
CNT30222384Eucalyptus grandisHordeum vulgare69.877.8690.83218reverse complement
CNT30684394Eucalyptus grandisTriticum urartu70.1922.4490.41219forward
CNT30104511Eucalyptus grandisOryza rufipogon31.7330.2887.8899reverse complement

Expression of CNT30537189

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MSRSFNYPSETHSRSIMHGCPRSFLSLGPTPQDMAQPKKRPRREPDFFSKVKLPKD*

>peptide 2 (41 aa)
MVAPGPFFLSVPPRKIWLSQKNGPGASLIFLVKSSSLKTREM

Sequence

>CNT30537189
GATAAATCTCCTCGTGCTCTGCCATAAGAACTTGGAGTCCGTATCATGGTGAAGGTAAGGTAACATTGTGATTCTTGCTCAAAAAAAGGATCGAACGCGT
TCGAGTTATTGGCTTGTCCAACCTGCCAGCATTCATGAGTCGTTCGTTCAACTATCCCTCAGAGACACATTCGAGAAGTATCATGCATGGTTGCCCCCGG
TCCTTTCTTTCTCTCGGTCCCACCCCGCAAGATATGGCTCAGCCAAAAAAACGGCCCCGGCGCGAGCCTGATTTTTTTAGTAAAGTCAAGCTCCCTAAAG
ACTAGAGAAATG