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Detailed information on CNT30677978


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L389|YCF4_SACHY, E-value = 6e-110

BLAST vs NONCODE:
NONOSAT000331, E-value = 2e-103

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30610466Setaria viridisGossypium raimondii17.2630.2182.26248forward
CNT30354656Setaria viridisLactuca sativa25.3312.7485.99364forward
CNT30323690Setaria viridisAsparagus officinalis33.6818.9788.02484forward
CNT30726954Setaria viridisLupinus angustifolius33.1917.9684.91477forward

Expression of CNT30677978

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MHEFMLVAYICIHRRFSFVCRKSYIPYHIILLTQKNICIMILEIH*

>peptide 2 (37 aa)
MEVRISYSYQDNWKPQPLRILMNLEKEYSSGQLKLRE*

>peptide 3 (29 aa)
MEEYYAIYLTWIKQIRSNFLLFSFVPSFR*

Sequence

>CNT30677978
AAATACAAGATATAGGAAAGAAGGCAATGCTTTCTTTTTTTTCATTTTTGATCTGTAAATTGAGTTGTTAATGAATCCGCTTCATTCGCCGACTCTATTT
CATTCGCTGAATATATATGATATTTCTTTTCTTTGAAACACAAATTCTATAACAAGGTTTGAGACCTTGTGTTTGTATCTATTTATCTTTTTGTATACTA
GTGGAATTTCATTGTATTGGGTTCTTTCTTAGATCTAAATGGAGTGGAATAGAGAAATAAAAAAAAGGCCTTTCATATAAAAATGGAAGAATATTATGCC
ATATATCTCACTTGGATAAAACAAATTAGAAGCAATTTTCTCTTATTCTCGTTTGTTCCTTCCTTTAGATAAATACTCGAAAATCCCTTACAATTGCAAA
AAATTGCAATTGGTACTCAAAATACTTCAATTGGTACACGCAAGAAATAGGCCAATTCGGCAGCTTTTTGTTCAATTTCTCGTGGAGTAAAAAACTTCTC
ATCAGTACGAGTCAAGGGAATGACCCCCTGGCCCCGGATTTCCATATAAAGGATACGACGAGGATAAAGACCCTCTTTAACCTGAATCCTAATTGATTGG
ATATCCCGCACAAGGAATCGAAGGAAGATGCGACGTTTTATTCCAGGGAATCCCCAACGAAAAATGCACACTATTCCCTCTTTTCTATCGAATCGGTCAT
AACCACTGCCTACATTCCACAAAATAGTGCACCACAAATAGGAGCTAATGAATAGGCCCGCGATTCCGTAGAAAGACATCACGACCCCCTGTGGAAAAAA
AAGAATTTGTTGAGATGGAAGTACGGATATCATATTCTTACCAAGATAACTGGAAGCCCCAACCGCTAAGAATCCTAATGAACCTAGAAAAAGAATACAG
TAGCGGTCAATTGAAATTGAGAGAATAAGCTAAATGATTTTGACTTTACTTTTTTTGATTCTGAAATAACCTTCAGTAGCTAGTACTCCTGTGAAATAAT
TGGTTAGATACATTGACTTTCTATTCAAAAAGAATTCGTGGATCCACTTAAAAAAAACTCGCTATACTCGGCTACGCATATGCATGAATTTATGCTCGTA
GCCTATATCTGCATCCATAGACGTTTTTCATTTGTGTGTAGAAAGAGCTACATACCCTATCATATTATATTACTTACACAAAAAAATATCTGTATTATGA
TCCTGGAAATACATTAAGAAAATTGGGCCCCGTCGTTTCTAGACAATCTTATTTTTCTGCACATAAAGAAATAAGGAAGCCATTGCAATTGCTGGAAATA
CTAAGCCTACTAAAGGCACGAAAATAGAGGGTAAGTTAAAATCTGTCATAGAATATGTGTCTCAATTCAAATTTACTATTTCTATCTATTCGAAATATAT
CTTAAGATTCTTATGATATAATTAAGTATATCTATTA