Detailed information on CNT30671650


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 3e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30454287Setaria viridisSaccharum spontaneum39.8527.4596.18157forward
CNT30370632Setaria viridisOryza glumipatula39.5920.2694.23156forward
CNT30496156Setaria viridisDigitaria exilis39.8516.9293.63157forward

Expression of CNT30671650

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MVAGTKQPSSFLRPGRELGGRAGSRGAPCR*

>peptide 2 (75 aa)
MACTKNPNMENMARRPFLISLTLSSAKICAPALNHTGSLKSTRTHFSSTSGVMQPSAPSIAHRPWITSSALLRANA

>peptide 3 (35 aa)
CTFLNPENKVFALIGGTKVTSSLQWWQARSSRLAS*

Sequence

>CNT30671650
TGCACATTCCTGAATCCTGAGAACAAGGTATTTGCATTAATTGGTGGTACAAAAGTAACGAGTAGTCTACAATGGTGGCAGGCACGAAGCAGCCGTCTAG
CTTCTTAAGACCCGGGCGCGAACTTGGTGGTCGAGCAGGTTCTCGAGGGGCCCCTTGCCGGTGACGATGGCCTGCACGAAGAATCCGAACATGGAGAACA
TGGCGAGGCGTCCGTTCTTGATCTCCTTGACCTTGAGCTCGGCGAAGATCTGCGCGCCGGCCTTGAACCACACGGGCTCCTTGAAGTCCACGCGCACCCA
CTTCTCGAGCACCTCGGGCGTGATGCAGCCCAGCGCGCCCAGCATCGCCCACCGCCCGTGGATCACCTCCAGCGCCCTGTTGCGGGCGAACGCC