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Detailed information on CNT30454287


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 2e-88

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671650Saccharum spontaneumSetaria viridis27.4539.8596.18157forward
CNT30370632Saccharum spontaneumOryza glumipatula55.2441.0492.41316forward

Expression of CNT30454287

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MQPSAPSIAHRPWITSSALFRANASGSADSPAVSQP*

>peptide 2 (31 aa)
MRKPSTRPMRMTWNPSTARMLCACTRLGLPR*

Sequence

>CNT30454287
AAACTAGTCCAGTACGTTTCTGAGTTCTGAGAGAGCACAAGGATATTTGCATTCGTTCATGGTACAAATGTAATGTCACAACACAAACGAGTAGTCTACA
ATGTCCCGGCACGCCGCCGTGTCCGGCTAGCTTAAGACCCTGGCGCGAACTTGGTGGCGTAGACCCAGGCGTTGTTGGCGACGGGGTCGTCGAGGCCGTT
GATGCGGAAGCCCTCGACGAGGCCCATGAGGATGACCTGGAACCCCAGCACGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCGAGGTAGTCC
AGCCCGCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCACACGGGCTCCTTGAAGTCCACGCGCACCCACTTCTCGAGCACCTCCGGGGTGATGCAGC
CCAGCGCCCCCAGCATCGCCCACCGCCCGTGGATCACCTCCAGCGCCCTGTTCCGCGCGAACGCCTCCGGGTCCGCCGACAGCCCGGCGGTGTCCCAGCC
GTAGTCGCCGGGGAACTCGCCGGTGAGGTAGGACGGCGTCTGCGCGGAGAAGGGGCCCAGGTACTTGACGCG