Detailed information on CNT30520434


BLAST search results

BLAST vs Swiss-Prot:
sp|P27523|CB23_HORVU, E-value = 2e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671567Setaria italicaSetaria viridis81.7261.79100304forward
CNT30370794Setaria italicaOryza glumipatula62.3732.4595.26232forward

Expression of CNT30520434

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MVAGTKQPSSFLRPGRELGGVDPGVVCDGVVEVVEQVLEGPLAGDDGLHEESEHGEHGEASVLDLLDLELGEGDGVVGEAERVEVLAARVEVA*

>peptide 2 (44 aa)
MACTKNPNMENMARRPFLISLTLSSAKVTGSSARPSGSKYWPPG*

Sequence

>CNT30520434
ACAGAGAGCATAATGCACATTCCTGAATCCTGAGAACAAGGTATTTGCATTAATTGGTGGTACAAAAGTAACGAGTAGTCTACAATGGTGGCAGGCACGA
AGCAGCCGTCTAGCTTCTTAAGACCCGGGCGCGAACTTGGTGGCGTAGACCCAGGCGTTGTTTGCGACGGGGTCGTCGAGGTGGTCGAGCAGGTTCTCGA
GGGGCCCCTTGCCGGTGACGATGGCCTGCACGAAGAATCCGAACATGGAGAACATGGCGAGGCGTCCGTTCTTGATCTCCTTGACCTTGAGCTCGGCGAA
GGTGACGGGGTCGTCGGCGAGGCCGAGCGGGTCGAAGTACTGGCCGCCCGGGTAGAGGTTGCATAGGTAGCG