Detailed information on CNT30556505


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 4e-106

BLAST vs NONCODE:
NONBNAT003428, E-value = 9e-12

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671567Panicum halliiSetaria viridis33.9148.1794.94237forward
CNT30453579Panicum halliiSaccharum spontaneum71.9663.6796.82503forward
CNT30132048Panicum halliiLolium perenne71.3953.2689.38499forward
CNT30347916Panicum halliiEragrostis tef23.8927.8392.81167forward
CNT30369948Panicum halliiOryza glumipatula69.8148.8585.45488forward

Expression of CNT30556505

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MHPSAPSIAHRPWITSSALLRANASGSAESPAVSQ

>peptide 2 (36 aa)
AAAYMDHKLHNIGFKSTQVTTDREHNANPKTPTVQS*

>peptide 3 (63 aa)
MACTKNPNMENMARRPFLISLTLSSAKVTGPLMRKPSTRPMRMTWNPSTARMLCACTRLGLPR*

>peptide 4 (38 aa)
QLHIWIINCTISVSRAHKSQLTESIMQTPKLLQYNPES*

Sequence

>CNT30556505
GCAGCTGCATATATGGATCATAAATTGCACAATATCGGTTTCAAGAGCACACAAGTCACAACTGACAGAGAGCATAATGCAAACCCCAAAACTCCTACAG
TACAATCCTGAATCGTGAGATGGCAATATTTGCATTCATTGGTGGTGGTACAATCGAGTAGTCTACAATGGTGGTCCGGCACGAAGAGGCCGCCGTCTAG
CTTAAGACCCGGGCGCGAACTTGGTGGCGTAGACCCAGGCGTTGTTGGCGACGGGGTCGTCGAGGTGGTCGAGCAGGTTCTCGAGGGGGCCCTTGCCGGT
GACGATGGCCTGCACGAAGAATCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTGACCTTGAGCTCGGCGAAGGTGACGGGGCCGTTG
ATGCGGAAGCCCTCGACGAGGCCCATGAGGATGACCTGGAATCCGAGCACGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCGA
GCCCGCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCAGACGGGCTCCTTGAAGTCCACGCGCACCCACTTCTCGAGCACCTCCGGGGTGATGCATCC
CAGCGCGCCCAGCATCGCCCACCGCCCGTGGATCACCTCCAGCGCCCTGTTGCGCGCGAACGCCTCCGGGTCGGCGGAGAGCCCGGCCGTGTCCCAGCC