CANTATAdb - search

Detailed information on CNT30671274

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3020944	Setaria viridis	Citrullus lanatus	18.46	32.93	81.02	137	forward
CNT30441637	Setaria viridis	Aegilops tauschii	25.61	52.05	84.21	190	forward
CNT30253145	Setaria viridis	Avena sativa	18.46	44.34	85.4	137	forward
CNT30606478	Setaria viridis	Gossypium raimondii	6.6	23.11	91.84	49	forward
CNT30715150	Setaria viridis	Malus domestica golden	18.46	56.61	81.02	137	forward
CNT30426944	Setaria viridis	Papaver somniferum	18.6	46.15	81.16	138	forward

Expression of CNT30671274

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MVRLKQSPIPLYGSDSLPALIISSCWSISKKRRG*

>peptide 2 (35 aa)
MPPSRIVKILFGDRSLHPKRMLEESSLYMNYYFWI*

>peptide 3 (31 aa)
MKENCPTDKSWADSTQPMTTNVSGDRCHRLG*

Sequence

>CNT30671274
GTAATAATGTATGAAGGAAAATTGCCCGACTGATAAAAGTTGGGCAGACTCGACTCAACCTATGACGACAAATGTTTCCGGGGACCGATGCCACCGTCTA
GGATAGTTAAGATACTGTTTGGAGATCGAAGCCTCCACCCAAAACGAATGTTGGAAGAATCCTCCCTCTACATGAATTATTACTTTTGGATATGAAAGGC
AAAAACTTCACCAGATCCTGATTGGGCATCCATGGAGCTCTTGTACTTGACAGCCTCACCAGACGTCATCATCATCCTTCTGCGGACAGTGTCAATGGGG
TAAGATGCAAGACCAGCGCCGTTGGTGATCAGCCAACCCAGGGCAAGGGAAGTAGCGGATAACGTTAGCAGTGTTACCCCTCCACAAGGAGGAGAAACCC
TCATCCTTGATGGTACGTTTGAAGCAGTCACCAATACCCTTGTATGGCTCAGACAGCCTACCAGCCTTGATCATCTCATCCTGCTGGAGCATTAGCAAAA
AGCGGAGAGGATGACACCGCTGGGACATTGATGCCACCACTGACAGACATTGAAGGGCCCCAAAGGCTCTGGGTCATGTAGTTCCTTGTGGGAAATCTCC
TCTCATAAGACGAGACAGAAGGGCAGATGTTACGGGCCCGTACACCTTCTGAGAAGCTGGAGCTCAGGTGGAACTGGCCACCGAGCTTATGAAGGACAGT
TGGTTGGTTGACCTGGTCCGCCATCACCACCTCAAAACAATT