Detailed information on CNT30671072


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224542Setaria viridisHordeum vulgare24.2613.1589.999forward
CNT308418Setaria viridisZea mays18.6334.2393.4276forward
CNT30686546Setaria viridisTriticum urartu22.5539.8391.392forward
CNT30595742Setaria viridisOryza meridionalis23.2828.7986.3295forward
CNT30320106Setaria viridisAsparagus officinalis20.344.6585.5483forward
CNT30149841Setaria viridisBrachypodium distachyon23.2824.384.2195forward

Expression of CNT30671072

Peptides detected in this lncRNA

>peptide 1 (31 aa)
SCLIYLIHNNMPAHYSKQNSQLGSACTLIFS*

>peptide 2 (33 aa)
MNKNTYFFLCIYELIIESTRLMHWWWFASCLTN*

Sequence

>CNT30671072
CTAGCTGCTTGATTTACTTGATACATAATAACATGCCTGCACATTACTCCAAGCAAAATTCACAACTAGGAAGTGCATGCACATTGATTTTTAGCTGAAG
GCGCAAGCAATCAAGAAACACACTGGCTGGCCTCAGCATCACACACTCACACGATCCAACATAGATGCATATGTAATTACAGTAGACAGCGAAGAGTCGA
TCTCCACATGAATAAAAACACATACTTCTTCTTATGCATATATGAGCTTATTATTGAGTCGACTCGATTGATGCATTGGTGGTGGTTTGCTAGCTGCTTA
ACCAATTAGCTAGTCGCGGCTCTTGAAGGGGATGGCCCTGATGATCACCACATGGTAGATGGCGGCAAGAGCAGCGCCGATGAAGGGGCCAACCCAGAAG
ATCCACTG