Detailed information on CNT30686546


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF58|PIP25_MAIZE, E-value = 2e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671072Triticum urartuSetaria viridis39.8322.5591.392forward
CNT30301148Triticum urartuTriticum aestivum43.2929.4189100forward
CNT30224542Triticum urartuHordeum vulgare40.2612.3597.8593forward
CNT308418Triticum urartuZea mays31.632.8886.373forward
CNT30364938Triticum urartuSorghum bicolor35.939.0585.5483forward
CNT30595742Triticum urartuOryza meridionalis38.5326.9794.3889forward
CNT30149841Triticum urartuBrachypodium distachyon38.5322.7691.0189forward

Expression of CNT30686546

Peptides detected in this lncRNA

>peptide 1 (46 aa)
DRRSFLIVVIYIDMHAPLNRVRSTIQKGGKVQQVLKLADLNSCWID*

Sequence

>CNT30686546
TCGATCGGCGTTCCTTCTTAATAGTAGTAATTTACATAGATATGCACGCTCCATTAAATCGCGTGCGTAGTACAATACAAAAGGGAGGGAAAGTACAACA
GGTACTGAAGCTCGCAGACTTGAACAGCTGCTGGATTGACTAGTCGCGGCTCTTGAAGGGGATGGCCCTGATCACCACCACGTGGTAGATGGCCGCCAGC
GCCGCGCCGATGAACGGGCCAACCCAGAAGA