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Detailed information on CNT30646562


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FJH0|RAA1F_ARATH, E-value = 4e-80

BLAST vs NONCODE:
NONMEST004329, E-value = 2e-31

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30402584Cannabis sativaBeta vulgaris26.1618.7981.25192forward
CNT30568133Cannabis sativaActinidia chinensis41.9616.9978.57308forward
CNT3088696Cannabis sativaVigna radiata11.3123.5885.5483forward

Expression of CNT30646562

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MKKVFSLSANAVASSVEMARKCLKSALFPTSITTMLASV*

Sequence

>CNT30646562
CCCACAACAAATGACTACATTGATCAATAAATACAAATAGATATATAACCTAACAAAAACTGACTAATGAATGACATTCAAAAAATGAATAGTTAAGTTC
CCCACAAAAAAAAAAAAAAAAAAAGAAACTCACCAAAGACATAAATGAATCTCTTTAGTCCAAAGCAGAGTTTCCAGTGAACTTTCTAGCGTCTCTTCCC
AGATAGAGCATGGTACTAGAAAGCACATTCAATTCAATCTGATTTCTCATATTTTTTCCATTAAGTTGTGGTAGTAAACCACATTCCAGAAAATAGAGAT
CAAGTACTGATCATGACACCAGGAATTTTCATTCCACAAACTATGCAGAGCAACATCCAACCTTTTTAACAGCAGAAACATCATCTTTGCCAACACTAAT
GGTTTGACCCTTGGGCAAGGCTGCTGGATCATCACCAATGTCGAGAGCTTTCTTGCTAACCACACGATATATCTGAGTGAGCACCTCAGTGAAGGAGTTC
TCAACATTCAAGGACTCTAAGGCAGAGGTTTCCATGAAGAAGGTGTTCTCTCTTTCCGCAAATGCTGTAGCATCCTCTGTAGAAATGGCGCGCAAGTGCC
TCAAGTCTGCCTTGTTTCCAACAAGCATAACCACAATGTTGGCATCAGTATGATCACGGAGCTCCTTCAACCATCTCTCAACATTCTCAAATGTAACATG
CCTGGTAACATCATAGACGAGCAATGCACCGACA