Detailed information on CNT3088696


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39222|RAA1B_ARATH, E-value = 3e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30646562Vigna radiataCannabis sativa23.5811.3185.5483forward

Expression of CNT3088696

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MHSLHWCRRSDLFPTSITTMLASVWFRSSFSHLSTFSNV

>peptide 2 (41 aa)
YFSEYYTYNRADTNQLNSYVFQLQNLSLSSIQLSSKQRHHF*

>peptide 3 (69 aa)
VFLRILHVQQSRYQPIEQLCFPTSEPQLEQHPTLFKAETSFLRSIFSPFAGTDAVPFSAPSTAFLLTMR*

Sequence

>CNT3088696
CGTATTTCTCAGAATATTACACGTACAACAGAGCCGATACCAACCAATTGAACAGCTATGTTTTCCAACTTCAGAACCTCAGCTTGAGCAGCATCCAACT
CTCTTCAAAGCAGAGACATCATTTTTGAGGTCAATTTTCTCCCCTTTTGCAGGCACAGATGCAGTTCCATTCTCAGCACCTTCTACTGCTTTCTTGCTAA
CAATGCGGTAGATTTGTGTCAGAACTTCAGCAAATGCATTCTCTACATTGGTGCCGAAGGTCTGATTTGTTTCCAACAAGCATCACCACAATGTTAGCAT
CTGTGTGGTTTCGCAGCTCTTTCAGCCATCTGTCAACATTCTCGAATGTTGC