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Detailed information on CNT30641322


BLAST search results

BLAST vs Swiss-Prot:
sp|P27495|CB24_TOBAC, E-value = 8e-127

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696035Nymphaea colorataOryza sativa53.9851.1886.78522forward
CNT3013856Nymphaea colorataZea mays42.338.4489.49409forward
CNT30345513Nymphaea colorataEragrostis tef55.6457.9786.8538forward

Expression of CNT30641322

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MDQAGVAEVVEPSLAEDLSSGLEPHGLTELDAVPGEQLGEDAAECAQHSPPSVDHLQLPVLGEGLGVG*

>peptide 2 (31 aa)
MRYPSTAPMRMTWQAQMAKMLCAWIRLGLPR*

Sequence

>CNT30641322
TTGATTGTGAATGCGCTTAGAGTCTGTAAATCTGTCACATGAATCCACATGTTGAAGAAGGTAGGTGCCTGTAAAAACACACACACACAAAGAGACCTTG
AGAGAGGGAGAGACAGAGAGAGACTTGGACAATGAATATCTCTTGATTAATTGGAAAAGGTTCTCACACTAACATGACACAAACTCTTAATCCTTCCATT
TCATGTACAAACCACCAGATCAAACGCCCCCACATAGATGATCATGACTCTTTTTAACTCATTCACTCAATCCTAGTCTGAACTCTTCATCCGTCCATCA
CAGTCGGAGAAAGGCCTCACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGCCAAGTGGGTCGAAGCT
GCCACCGGGGTACAGGGGATCTGTCACCTCACCGAGCGGTCCGCCGGCAATGCGGTACCCCTCAACGGCACCCATGAGAATGACCTGGCAGGCCCAGATG
GCCAAGATGCTCTGTGCATGGATCAGGCTGGGGTTGCCGAGGTAGTCGAGCCCTCCCTCGCTGAAGATCTGAGCTCCGGCCTTGAACCACACGGCCTCAC
CGAACTTGACGCCGTTCCTGGCGAGCAGCTCGGGGAAGACGCAGCCGAGTGCGCCCAACATAGCCCACCTAGCGTGGATCACCTCCAGCTCCCTGTTCTT
GGCGAAGGTCTCGGGGTCGGCTGAGAGCCCAGCGGTGTCCCAGCCGTAGTCACCGGGGAACTCACCGGTAAGGTAGGATGGGGGCTCGCCGGACAAGGGG
CCGAGGTATTTGACACGGTCTGGGCCGTACCAGGGGCTGCCGGAGGAGGCGGCAGAGGGGGTCAGCTTGACCGCCTTTCCGGCCAGAGTTGGGGAAGACA
GAGCCATGGTTGCCATTGCTTGCTCTCTCTTCTCAGATTTCTCTTCTGCAAAGGTGTGTGGGTGAGT