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Detailed information on CNT30630601


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000814, E-value = 8e-74

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224866Vigna unguiculataHordeum vulgare17.345086.29124forward
CNT3087008Vigna unguiculataVigna radiata46.5752.1193.09333forward
CNT30721805Vigna unguiculataTriticum spelta27.1313.4387.63194forward
CNT30644842Vigna unguiculataCannabis sativa29.7952.7288.26213forward

Expression of CNT30630601

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MSLTAKRPSGGYSEKVSTHQFQHVQQVRFQFLQSCTHPEGVT*

Sequence

>CNT30630601
GGGCTCGTCCTAAATATCACTGTAGCTTACCAAATTATAAACGTTCTCACAAAAACACATTACACAAGAAATAAGGCATAGAAAAAAAAAAAAAAAGTCT
AAACCCTGCCCCCATCGACCAAGAACCCAATTCTGAGAACAAAATTTGAGAGATGAGGGAGAAAACCTCAAACAAAATACGAAAAACAATATCCTGACAC
GAAAAATAACAGCGTCTACAAGAAGACACCATTTATCACAGGCATAATAACAGATTTCTTGATAGACCCTGCGCAATTTATTTCTTCTTCTGTGCAGCCT
TGGTGACTTTAGCTCCAGTAGGGTCCTTCTTCTCCACGCTCTTGATGACTCCCACAGCCACAGTTTGACGCATGTCTCTCACAGCAAAACGACCAAGTGG
AGGATATTCAGAGAAGGTTTCAACACACCAGTTTCAACACGTCCAACAGGTACGGTTCCAATTCCTCCAATCTTGTACACATCCTGAAGGGGTAACCTAA
GAGGCTTGTCTGATGGCCTCTTTGGCTCATTGATATTATCAAGAGCCTCCAGAAGGGTTGGACCCTTATACCAGTCAAGGTTGGTAGACCTCTCAATCAT
GTTATCTCCCTCAAAACCAGAGATGGGAACAAAAGGGATCTTGTCAGGGTTGTAACCGACCTTCTTCAAATACGAAGAAACTTCCTTCACAATTTCATCA
TACCTTGCCTTGGAG