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Detailed information on CNT30629284


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FXA2|PABP8_ARATH, E-value = 7e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30499849Vigna unguiculataCoffea canephora39.4611.1282.76116forward
CNT3019796Vigna unguiculataCitrullus lanatus21.0911.1787.162forward
CNT30410641Vigna unguiculataPapaver somniferum21.0911.9787.162forward

Expression of CNT30629284

Peptides detected in this lncRNA

>peptide 1 (63 aa)
LCCSGEALARADAKAPIGICCESDASRIGIPPTSYGTENIPPATPGIGTGCWDCWTARLPPGR*

Sequence

>CNT30629284
CTCTGCTGCTCTGGAGAAGCATTAGCCAGAGCCGATGCCAAAGCCCCAATAGGAATTTGCTGTGAGAGTGATGCATCACGAATTGGCATCCCACCCACAT
CATATGGAACAGAAAACATACCCCCAGCAACCCCAGGCATAGGAACTGGCTGCTGGGACTGTTGGACTGCACGCCTTCCACCAGGGCGCTGACCCTGTTG
TCCCTGCTGAACCATTGGTACAAAGAAATTTGGCACAGGAGCTGCACCTGGCCTCATACCAGGCACAAGTTGTTGTTGATAACCAAATCCGGGC