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Detailed information on CNT30499849


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30615854Coffea canephoraSesamum indicum13.4262.585.71140forward
CNT30401712Coffea canephoraBeta vulgaris5.8524.688.5261forward
CNT30629284Coffea canephoraVigna unguiculata11.1239.4682.76116forward
CNT30642359Coffea canephoraCannabis sativa4.7923.79250forward

Expression of CNT30499849

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MHTILFYFLEWTKLNRQKCRILAYRPLISRRSICKGRCQSPNWNWLRYNITQWHATHIIWDRKHASTNTWHGDISGTGC*

>peptide 2 (76 aa)
MPPISYGTESMPPPTPGMETSVELVVDPAGLEQLHPACHQDAVLAALAELMAQKSLASDLHQASFQEQAAVDNQNQA

>peptide 3 (85 aa)
MSNISLPSSDQQEKHLQGQMPKPQLELAEIQHHAMACHPYHMGQKACLHQHLAWRHQWNWLLTLLDWNSCTPPATRTLSLLPLLN*

Sequence

>CNT30499849
CTGCAGTTAAAATCATACTAAGTGATGACAAATTAACAATTCCGATAATAATAGAACTCTCAAACTAAGCATCATAACTCACCCCACATTATGCTCGGGA
TGGGATAAAGGGAAGCAAAGAAATTGTCAAAGTAAGGAGATTGTCCAGTAAGAACATGCTCCAACAAACTTATGACCCAAGAGAAGCACACATTCAAGCA
TGAACATCACTAGTCAAATGTCCTCCTCAATTATGTCAGAAATATGTGCTTTAAGAATTATTTACAAAGTTGCCACACAGTGAAAACCATTATGCCCAAG
ACATCCCACAAGTACTAAAACCCAAAAACAGCACAACTCCTTGAAACAAACCCTTCACTTTTTCCAGTCGAAGTGTTTAAACAAACATATTATAAAAACA
ATAAGAACCAAAAGATGCTCTTGACAGTTTCCACAATTTCAAAGTATCTAGCTCAACATGAGATACAGAAAAACTGATGGACCAAATTACTAAGTACTGC
TCTTCAAAGACTAGAAGCTGCCAAGCATAAAAAGCACAATTCAAACACAACAGGCATCAGTTGAGAACTCCAAAATCACCATTATTAGAACACAGCAATT
ATGGATAAATACACACATGTACAGCATCCTAAATTAAGAATATAAAGGCACATGCATACTATACTTTTCTATTTTCTTGAATGGACTAAGCTAAACAGAC
AAAAATGTCGAATATTAGCCTACCGTCCTCTGATCAGCAGGAGAAGCATTTGCAAGGGCAGATGCCAAAGCCCCAATTGGAACTGGCTGAGATACAACAT
CACGCAATGGCATGCCACCCATATCATATGGGACAGAAAGCATGCCTCCACCAACACCTGGCATGGAGACATCAGTGGAACTGGTTGTTGACCCTGCTGG
ACTGGAACAGCTGCACCCCGCCTGCCACCAGGACGCTGTCCTTGCTGCCCTTGCTGAACTAATGGCACAAAAAAGTTTGGCATCGGACCTGCACCAGGCC
TCATTCCAGGAACAAGCTGCTGTTGATAACCAAAACCAGGCTG