Detailed information on CNT30625077


BLAST search results

BLAST vs Swiss-Prot:
sp|P09189|HSP7C_PETHY, E-value = 1e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3070359Daucus carotaQuercus suber30.1434.182.69104forward
CNT30572753Daucus carotaVitis vinifera33.338.1982.61115forward
CNT30582481Daucus carotaEchinochloa crusgalli25.819.186.5289forward

Expression of CNT30625077

Peptides detected in this lncRNA

>peptide 1 (36 aa)
DTQKIFCSHWNYEFTCRILKIQIIQNNQRLKTSKNP*

>peptide 2 (40 aa)
MGFSPGPGVILNGHSLISLCTEASENLLPINLLASVEQQK*

>peptide 3 (29 aa)
YAKNILFTLELRIHVQNIKNSDYPKQPKT*

Sequence

>CNT30625077
GATACGCAAAAAATATTTTGTTCACATTGGAACTACGAATTCACGTGCAGAATATTAAAAATTCAGATTATCCAAAACAACCAAAGACTTAAAACAAGTA
AAAACCCATAACTTAGTCGACTTCCTCAATTTTGGGACCAGCGCTGCCTCCAGCACCTGATGGGATGTCATCATCATCCATAGGAGCACCTTCACCTCCT
GCACCCTGGCAACTGTGATCATGGGTTTCTCGCCAGGTCCAGGGGTGATTTTGAATGGCCATAGCTTAATATCACTCTGCACAGAGGCATCAGAGAATCT
CCTGCCTATCAACCTCTTGGCATCTGTCGAACAACAAAAATAATA