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Detailed information on CNT30622934


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30157646Daucus carotaPistacia vera59.2970.1384.11925forward
CNT30229606Daucus carotaAnanas comosus57.2467.483.54893forward
CNT30359535Daucus carotaLactuca sativa56.9952.6384.36889forward

Expression of CNT30622934

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSRVIVFPVKVLTKICIPPRSLRTKWRVDSFWML*

>peptide 2 (56 aa)
MPSLSWILALTLSIVSELSTSRVMVFPVRVFTKICICTSTQSQQFRLHSNQTTNYV*

>peptide 3 (31 aa)
MVSELSTSKVIVFPVRVLTKICIPPRRRSTR*

>peptide 4 (30 aa)
MVFPVKVLTKICIPPRRRRTKWRVDSFWIL*

Sequence

>CNT30622934
TATCACACGACCACAGCAAAATACTTATTAAACTGATCTTTTATTAAGACTTAAAGCCACCACAACACATTGTTCTTTCCCCCACAGGGGAAAACACTAA
AACAAACTTTGATTTAAAACAAACAAGTTCAACAGAAACACAAACTTCTTTTCAGAAACCACAGCCACGGGCGCTTCCAACAGGCTTAGAGATCACCACC
ACGAAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAATCTGCAAGGGTCCTTCCATCCTCAAGCTGCTTACCAGCAAAGATCAACCTC
TGCTGATCTGGAGGAATACCTTCCTTATCCTGAATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCCACTTCCAAGGTGATAGTCTTTCCAGTCA
GAGTCTTAACAAAGATCTGCATACCACCACGCAGACGAAGCACAAGGTGAAGTGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTCCTGCCGTCTTC
CAATTGCTTTCCAGCAAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCAATGGTGTCAGAGCTCTCA
ACCTCAAGAGTAATAGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCATACCACCACGGAGCCTGAGGACCAAGTGGAGAGTTGACTCCTTCTGGATGT
TGTAGTCGGCAAGGGTCCTGCCATCCTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTT
GACATTGTCGATCGTGTCAGAGCTCTCGACTTCAAGGGTGATGGTCTTCCCTGTCAAAGTCTTGACGAAGATCTGCATACCACCACGAAGACGGAGGACC
AAATGGAGAGTTGACTCCTTCTGGATATTGTAGTCGGCAAGGGTCCTGCCGTCTTCAAGTTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAA
TGCCTTCCTTATCCTGGATTTTGGCCTTGACGTTGTCGATTGTGTCGGAGCTTTCGACCTCAAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAGAT
TTGCATCTGTACATCAACACAATCACAACAATTTAGACTACATTCAAATCAAACAACTAATTATGTCTGACAACACATATCTACGTCTATTTAAACAATG
AAACAATCAAAGCAGCCCTAATTTTATTAAGAAAAATATACATATACACAGAGATTTGCATCGGTGTAATAATCTCGATTAAATCAACAAACCAGCACTA
ATACAATCACAACAAGACTAAATTAATAACTAATTAGGTCAACTATCACGCATCTGAATAAACCCAAATCAATAAACCTAAAATCAACCACTATTTAGGT
AAAGCACAAGGCTCTCCGTCTTTGTAGAGATGTAAACACGATTAAATCAACAAATTGACATAACCTTGATGATAAAAAACAGATGAACATCTAATTAGGT
CAAAAACAACGAAATCTATGCATATATATACACGTATAAACATAATCAAAACAACAAATT