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Detailed information on CNT30359535


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 4e-99

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641251Lactuca sativaNymphaea colorata54.5352.0683.17921forward
CNT30528288Lactuca sativaEucalyptus grandis54.1168.2185.23914forward
CNT30546269Lactuca sativaIpomoea triloba49.3892.8782.97834forward
CNT30279009Lactuca sativaChenopodium quinoa51.9857.4684.74878forward
CNT3019912Lactuca sativaCitrullus lanatus53.8854.4684.07910forward
CNT30381906Lactuca sativaManihot esculenta53.478.4382.26902forward
CNT30630785Lactuca sativaVigna unguiculata40.279.685.42679forward
CNT30201346Lactuca sativaPisum sativum39.7365.0285.39671forward
CNT3094992Lactuca sativaSolanum tuberosum53.7678.0183.15908forward
CNT3089455Lactuca sativaVigna radiata53.7674.6783.81908forward
CNT30171101Lactuca sativaTrifolium pratense53.9454.7884.08911forward
CNT30312659Lactuca sativaCamelina sativa52.6345.1584.81889forward
CNT3061767Lactuca sativaArabidopsis lyrata54.2356.0981.99916forward
CNT30264722Lactuca sativaBrassica rapa52.5883.9383.45888forward
CNT30229606Lactuca sativaAnanas comosus52.9967.5583.8895forward
CNT30217431Lactuca sativaKalanchoe fedtschenkoi54.5968.0982.97922forward
CNT30214147Lactuca sativaHelianthus annuus40.2684.5885.44680forward
CNT30716337Lactuca sativaMalus domestica golden53.7673.2884.8908forward
CNT30622934Lactuca sativaDaucus carota52.6356.9984.36889forward
CNT30423866Lactuca sativaPapaver somniferum53.7670.9981.94908forward
CNT30704857Lactuca sativaPrunus avium53.8857.6385.49910forward
CNT30321313Lactuca sativaAsparagus officinalis50.5665.1483.49854forward
CNT30120658Lactuca sativaCitrus clementina53.7690.2682.49908forward
CNT30174646Lactuca sativaVigna angularis52.8185.684.19892forward
CNT30334103Lactuca sativaCynara cardunculus54.4745.6684.02920forward
CNT3051100Lactuca sativaCucumis sativus53.9464.1182.55911forward
CNT30114596Lactuca sativaEutrema salsugineum51.9284.983.81877forward

Expression of CNT30359535

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVSELSTSNVIVFPVKVLTKICIPPLKRRTKWRVDSF*

>peptide 2 (44 aa)
MPSLSWILAFTLSMVSELSTSRVMVFPVRVFTKICIPPLRRRTR*

>peptide 3 (46 aa)
MPSLSWILAFTLSMVSELSTSRVMVLPVRVLTKICICSQRTNTIRI*

>peptide 4 (71 aa)
MKGGFLLDVVVSEGTAVLELLSGEDQSLLVWWNTFLVLDFCFHVVDCVGALDLEGDGLSGEGLDEDLHTSP*

>peptide 5 (30 aa)
MVFPVRVLTKICIPPLSLRTRWRVDSFWML*

Sequence

>CNT30359535
TTATTCACCAAATGAGTTCATTATTCTTATTTATTAAACGAAACCAGTACCATTTCAAACCATACCATCAATCAAACACTTAAAACCATCCATGAAATCT
CACACATCCCAAACACAAAAGTTTCAATTTCCTCCACGTAGACGAAGAACAAGGTGGAGGGTTGACTCCTTCTGAATGTTATAGTCAGCAAGGGTCCGGC
CATCCTCAAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGATCCGGTGGGATACCTTCCTTATCCTGAATTTTCGCCTTCACATTGTCAATGGTGTCAGA
GCTTTCCACCTCCAATGTTATCGTCTTCCCAGTCAAAGTCTTGACAAAAATCTGCATACCACCTCTCAAACGAAGAACCAAATGGAGAGTTGATTCCTTC
TGAATGTTGTAATCAGCAAGAGTACGGCCGTCCTCCAGTTGCTTTCCGGCGAAGATCAACCTCTGTTGGTCAGGTGGGATGCCTTCCTTATCTTGGATTT
TGGCTTTCACGTTGTCGATGGTGTCGGAGCTTTCAACTTCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATCCCTCCCCTGAGACG
GAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCT
GGTGGAATACCTTCCTTGTCCTGGATTTTTGCTTTCACGTTGTCGATTGTGTCGGAGCTCTCGACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTGA
CGAAGATCTGCATACCTCCCCTTAGCCTAAGAACAAGATGGAGGGTTGACTCTTTCTGGATGTTGTAGTCGGCAAGGGTACGGCCGTCTTCAAGCTGCTT
TCCGGCGAAGATAAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATTTTGGCTTTCACGTTGTCGATGGTGTCGGAGCTTTCGACCTCTAGG
GTGATGGTCTTACCGGTGAGGGTCTTAACGAAGATTTGCATCTGTAGCCAAAGAACGAACACGATAAGAATATAAACAACAAATAACAACAGAAATCATA
TAAAATCAGATGCAAGGTCAGATATTGTAAAGCCTATAACATCAATCGAACATAAAACTGCAGATTTTCTTGTTCAAGACACAAGATTATAACATAAATC
AAAATAATGAAATCGAATAGAACATCTTAGTTCATGTTACAGTCGAGATGACAATCATAGATTCGTAGCCTATTGTAAACATCAATTTCGATTATACGAT
TCAGATCTAAGGGATCTGTTGATCAGATCGATATAGCTCCAACAAACAACAGCGGATCATGATCATATCAACATCTAACGAATTGAGAAAACAAAACTCT
GAAGATAATCTTAGATACGAGAAGTGAAAGAACGATCATTAAATTTTACCAAATCGCTGTTTACGGAAGATTCTAGAATTATTCATCAAGATTATAATTC
AATAAATTTCCAAAATTTTGTTGCAAAAACACAAATTCAAAGAATAGAGTTGCAGATCTAATCGATCTGTTAAAGAAGATCGAATTTGATGCAACAAACA
ACCACCGATCGGAATCATTAACCTAGCAAACAATTCAGAAAAATAAAAAGAAATCGAGAAAAATAAAATGGAAAAGGCAACATACCTTG