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Detailed information on CNT30608632


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 4e-157

BLAST vs NONCODE:
NONTPRT002153, E-value = 3e-117

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30728104Gossypium raimondiiCorchorus capsularis64.8654.2688.33694forward
CNT30380572Gossypium raimondiiManihot esculenta64.0270.0484.09685forward
CNT3031779Gossypium raimondiiTheobroma cacao64.7771.5289.61693forward
CNT3066368Gossypium raimondiiSelaginella moellendorffii63.9376.3483.04684forward

Expression of CNT30608632

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MVSELSTSRVMVLPVRVLTKICIFGELIEKRFKKSLNRSALDGERGGEAMLI*

>peptide 2 (40 aa)
MVSELSTSKVMVLPVKVFTKICIPPRRRRTRWRVDSFWML*

>peptide 3 (54 aa)
MEREGVRRCLYRREGVDFLRLEGLEETRKLRSDESACSYVSHTVVFLRLAYATC*

Sequence

>CNT30608632
GCAGATACGAAATCACCAAACTTTTATTCCAAACAGAAGGTTTACTTAGATTAACATGTTACATTCAGAGATAAGAAAATAGGCACTTTCCTAAAGGCTT
ATTTGTGACCATCTTAAGCTAGAACAAAGACAGAAGAAGAATTAACTTCTCACTGCCCACCACGGAGACGAAGAACAAGGTGAAGGGTGGACTCTTTCTG
AATGTTATAATCAGCTAAAGTCCTCCCATCCTCCAATTGCTTGCCAGCAAAGATGAGCCTTTGCTGATCTGGGGGGATACCTTCCTTGTCCTGAATCTTT
GCCTTCACATTGTCAATTGTATCCGAACTTTCCACCTCCAATGTGATTGTTTTCCCAGTCAATGTCTTAACGAAAATCTGCATGCCTCCACGAAGCCTCA
AAACAAGGTGAAGGGTCGATTCCTTCTGGATGTTATAATCAGCCAAGGTCCTCCCATCCTCAAGCTGCTTCCCTGCAAAGATCAAACGTTGTTGGTCTGG
CGGGATCCCTTCCTTGTCCTGAATCTTCGCCTTTACATTGTCGATGGTGTCCGAACTCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAAGGTTTTCACG
AAGATCTGCATTCCCCCGCGAAGACGGAGGACGAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCGTCCTCGAGCTGTTTTC
CGGCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTAGACTTCACATTGTCGATGGTGTCAGAACTCTCAACCTCGAGGGT
GATGGTCTTGCCGGTAAGGGTTTTGACGAAGATCTGCATCTTTGGAGAGTTGATTGAAAAAAGATTTAAGAAGAGCTTGAATCGGTCTGCGTTGGATGGA
GAGAGAGGGGGTGAGGCGATGCTTATATAGAAGAGAGGGTGTGGATTTTCTTAGGTTGGAAGGTCTGGAGGAAACGAGAAAATTGCGGTCAGATGAGTCG
GCGTGCAGTTACGTTAGCCACACGGTGGTGTTTCTAAGATTGGCCTACGCAACTTGCTAATTCATTCTCG