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Detailed information on CNT3031779


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 5e-151

BLAST vs NONCODE:
NONTPRT002153, E-value = 3e-86

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30608632Theobroma cacaoGossypium raimondii71.5264.7789.61693forward
CNT30120554Theobroma cacaoCitrus clementina71.5272.0484.85693forward

Expression of CNT3031779

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MSLCWSGGIPSLSWILALTLSMVSELSTSRVMVLPVRVFTKICIF*

>peptide 2 (62 aa)
ANFYSILRLTSYKCDKTQISNIKEKEKKALPYYDSILNLKQRQNLSFRTITAHHGDEGQGGG*

Sequence

>CNT3031779
GCAAACTTTTATTCCATACTTAGATTAACATCTTACAAATGCGATAAGACCCAGATATCAAACATTAAAGAAAAAGAAAAAAAGGCACTTCCTTATTATG
ACAGTATCTTAAATTTAAAACAACGACAAAACCTTTCCTTTAGAACAATCACTGCCCACCACGGAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGA
ATGTTATAATCAGCTAAAGTCCTCCCATCCTCCAATTGCTTCCCGGCAAAGATAAGCCTTTGCTGATCTGGGGGGATTCCTTCCTTATCCTGAATCTTTG
CCTTGACATTATCGATTGTATCCGAACTTTCCACCTCCAAGGTGATTGTTTTTCCAGTCAAGGTCTTGACAAAAATCTGCATTCCTCCACGAAGCCTCAA
AACAAGATGAAGGGTTGATTCCTTTTGTATGTTGTAATCAGCCAAGGTCCTCCCGTCCTCAAGCTGCTTCCCAGCGAAGATCAATCGTTGTTGGTCTGGT
GGGATCCCTTCCTTATCTTGGATCTTGGCCTTAACGTTATCAATCGTGTCCGAGCTCTCGACCTCCAGGGTTATAGTCTTTCCTGTCAAGGTTTTGACGA
AGATCTGCATACCGCCACGAAGACGGAGGACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCCAAGGTACGGCCGTCTTCGAGCTGTTTGCC
AGCGAAGATGAGCCTTTGCTGGTCGGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGGAACTCTCGACCTCGAGAGTT
ATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATCTTCTAAAAGGCTATGAGAATAATCTGAGGAGATGATTTGAGAAAGATTTTGATTTGCTCTG
TTTGGATGCGAGATAACACGGGTGGAGAGGGGAATTTATATAGGAGAAGGAGAGGAGGTGACCGACTCG