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Detailed information on CNT30728104


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 2e-156

BLAST vs NONCODE:
NONGMAT000502, E-value = 7e-91

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30169881Corchorus capsularisPistacia vera53.442.586.24683forward
CNT30608632Corchorus capsularisGossypium raimondii54.2664.8688.33694forward
CNT30620158Corchorus capsularisCajanus cajan35.5764.6385.05455forward
CNT3031515Corchorus capsularisTheobroma cacao55.4376.489709forward

Expression of CNT30728104

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MVLPVRVLTKICMPPRRRRTRWRVDSFWML*

>peptide 2 (79 aa)
MKGRLLLDVVIGQGTAVLELFPGEDETLLVWWDSFFVLNLCLDVVDCVRTLDLQGYGFAGQGFNKDLHASTKAEDKVEG*

>peptide 3 (57 aa)
MRRCWSGGIPSLSWILALTLSMVSELSTSRVIVFPVRVFTKICIFQKENHKKAKVFD*

Sequence

>CNT30728104
AGCTCCCTCCAATGGCTTCCAGTATTGAAAGGAAATTATAATTGAGATATTATGTTCAAATGAAAGATAATTAAACAGTGAAGAAAAAGAGAAGCATATG
CGGAAAAACACCAACTTTTATTCCAGAGCAGGTAATTAGATTACCATTACACGATACTTAAAAAAGACCCAGAAATTAACTAAAAGCAAAAACATAGACC
AATGAGCGATTCAATTAAGGCTCATTACACAGACAATCTTAAAACTTGAAACTTTAAAGCAAAGACAGACTCTTTCATTGAGAACAATCACTGCCCACCA
CGGAGACGAAGAACAAGGTGAAGGGTAGACTCTTTTTGAATGTTATAATCAGCTAGAGTCCTTCCATCTTCCAATTGCTTCCCTGCAAAGATAAGCCTTT
GCTGATCTGGGGGAATCCCTTCCTTGTCCTGAATCTTTGCCTTGACATTATCAATTGTATCAGAACTTTCAACCTCCAGGGTGATTGTTTTCCCTGTCAA
GGTCTTAACGAAAATCTGCATACCTCCCCTGAGCCTCAAGACAAGATGAAGGGTCGACTCCTTTTGGATGTTGTAATCGGCCAAGGTACGGCCGTCCTCG
AGCTGTTTCCCGGCGAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCTTTGTCCTGAATCTTTGCCTTGACGTTGTCGATTGTGTCAGAACTCTCGA
CCTCCAAGGTTATGGTTTTGCCGGTCAGGGTTTTAACAAAGATTTGCATGCCTCCACGAAGGCGGAGGACAAGGTGGAGGGTTGACTCCTTTTGGATGTT
GTAATCGGCCAAGGTACGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTG
ACGTTATCGATGGTATCGGAACTCTCGACCTCGAGAGTTATTGTCTTTCCGGTGAGGGTTTTCACGAAGATCTGCATCTTTCAGAAAGAAAATCACAAAA
AAGCAAAGGTTTTTGATTGAATTTTGAGAATAGAGAATCGAGAGAGAAAGCAAAGAAATTAGGTTTTCTTTGTTTGGATGAGAGAAAAGGGAAGGCGAAG
GGCTGCTTTTATAGGGAAAGGAAATCGTGACCGACTCGAAATAGGAGTTTGGGAATCTTAATTCCAAAGGGAAAGGGAAAAGAAAAGTCCGGAAAAGGCG
AGAAAATTGCGGTCATATGAGTCGGCGTAACGTTAACCACTCGTTTACTATTTTTTTATTTGTGATTTTTTTTAAAGCC