Detailed information on CNT30596279


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553906Oryza meridionalisOryza glaberrima70.1828.2392.32560forward
CNT30370123Oryza meridionalisOryza glumipatula78.8225.1990.94629forward
CNT30106983Oryza meridionalisOryza longistaminata58.1531.1694.83464forward
CNT30101645Oryza meridionalisOryza rufipogon27.4424.6997.26219forward
CNT30576500Oryza meridionalisOryza barthii70.1819.8992.14560forward
CNT30116684Oryza meridionalisOryza nivara99.629996.6795forward

Expression of CNT30596279

Peptides detected in this lncRNA

>peptide 1 (49 aa)
YETSHESDALVQVRKLKPTTHHTHIYIQIHIQVPSIFLLKAAGCSSSLG*

>peptide 2 (45 aa)
MLIELGRKITKRTSKVVDYQTALVRIAPPGCWQACCVVVDSGEIN*

>peptide 3 (29 aa)
MLKFTVVGYTILYTKLLCFRISDFEPAVI*

>peptide 4 (84 aa)
MDLMEKSRRANFLFDDNDGDEDQNGKQNKGEANKDKKGLTHVNRAGEKNNKENFKSRGLPNGTSKDRSSGLLASLLCCCGQRRN*

Sequence

>CNT30596279
TACGAAACCTCTCATGAATCTGATGCCCTAGTGCAAGTGCGCAAACTGAAGCCAACCACACACCACACACACATATATATACAGATTCACATCCAAGTTC
CTTCCATTTTTCTTTTGAAAGCTGCAGGGTGCTCTTCTTCTCTAGGTTGATCATATATCATCTGAGAGCTCCAAACTAAAGCCTGCAGCCATGGATCTGA
TGGAGAAGTCCAGACGAGCAAATTTCTTGTTCGACGACAACGACGGAGATGAGGATCAAAACGGCAAACAAAATAAGGGAGAGGCTAATAAGGACAAGAA
GGGATTAACTCATGTTAATCGAGCTGGGGAGAAAAATAACAAAGAGAACTTCAAAAGTCGTGGACTACCAAACGGCACTAGTAAGGATCGCTCCTCCGGG
TTGCTGGCAAGCTTGCTGTGTTGTTGTGGACAGCGGCGAAATTAACTAAGTCGTAGTACAAAATGAGACACACATCCTAGTTCTACGATTCGAGATTTGA
GGTATGCTTAAATTTACAGTAGTAGGATATACCATATTATATACTAAGTTGTTATGTTTTAGGATATCGGATTTTGAACCAGCTGTGATTTGATCTTATA
TGTACTAGTGGCACCGCCAGTTACCGGTGATTACCAATTACTCTCATGTGTGTTAAGTTAACCATGCATACATGAATGTAGAGACTGGGATGAATATGTT
GATTATTATCTTATAAAAGAAATTAGATAGTACTACATGTGATTGTGTATGTGTGTTTAGATATTAATGTTATGCAAGAATATTGTACTATCGCCATA