Detailed information on CNT30370123


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697378Oryza glumipatulaOryza sativa6.6940.3485.03167reverse complement
CNT30553734Oryza glumipatulaOryza glaberrima54.1948.4897.491353forward
CNT30596279Oryza glumipatulaOryza meridionalis25.1978.8290.94629forward
CNT30106983Oryza glumipatulaOryza longistaminata36.6861.5291.38916forward
CNT30576500Oryza glumipatulaOryza barthii54.1948.0597.561353forward
CNT30116684Oryza glumipatulaOryza nivara25.0777.9688.34626forward

Expression of CNT30370123

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MRLDRELQFTPILTSGLKRSLHTFSKAKHPISSARNGPRSPYMAHV*

>peptide 2 (50 aa)
MGQEAHTWPMYDPQHCLGQSPSLVEKPSLVGPPKSTIVSVPIKTGTKKYF*

>peptide 3 (40 aa)
MQEYCTIAIYIIVSTCLIYLTYITCTIYKFLSQIVLLNRD*

>peptide 4 (45 aa)
MMLGRIPMACQKCIAIGQWRQRWAAFSSAILQRARKWQCRRCNSS*

>peptide 5 (66 aa)
MRIKTTNKIRERLIRTRRDQLLLIELGRKLTERSSKIVDYQTALVRIAPPGCWQACCVAVDRGEIN*

>peptide 6 (81 aa)
MEKSRRANFLFDENDGDEDQNDKQNKGEANKDKKGSTPVNRAGKKINREEFKNRGLPNGTSKDRSSGLLASLLCCCGPRRN*

>peptide 7 (31 aa)
MANTILVAMAKTKKQLVCEERDKKESGGEEK*

Sequence

>CNT30370123
TAATAATTAACCTGCATGCACATGTAAATTAAACTAGTAAATATTTTGCAGGATCTTATGGAGAAGTCCAGACGAGCAAATTTCTTGTTCGACGAAAACG
ACGGAGATGAGGATCAAAACGACAAACAAAATAAGGGAGAGGCTAATAAGGACAAGAAGGGATCAACTCCTGTTAATCGAGCTGGGAAGAAAATTAACAG
AGAGGAGTTCAAAAATCGTGGACTACCAAACGGCACTAGTAAGGATCGCTCCTCCGGGTTGCTGGCAAGCTTGCTGTGTTGCTGTGGACCGCGGCGAAAT
TAACTAAGTTCTAGTACAAAATAAGACGCATCCTAATTCTACGAATCGGGATTTGAGGTATGCTTGGATTTGCAGTACTAGAATATACCATAATATATAC
AAGTTGTTATGTTTTGGAACGGAGGGGTATATAACAATGATGTCGGATTTTGAACCAGCTGTGATTTGATCTTATATGTACTAGTGGCACCGCCGGTTAC
CGGTGATTACCAATTACTCTCATGTGTGTTAAGTTAACCATGCATACATGAATGTAGAGACTGGGATGAATATGTTGATTATTATCTTAAAAGAAATTAG
ATAGTACTACATGTGATTGTGTGTATGTGTGTTTAGATATTAATGTTATGCAAGAATATTGTACTATCGCCATATATATAATCGTGTCAACTTGTTTGAT
ATATTTGACATATATAACTTGTACAATTTACAAATTTCTTTCTCAAATTGTGTTACTTAATCGTGACTGAGAAGTGGAAGAGGCTTGCTCCACGAAGATA
CATACGTACAACCACAGCGATAACAAAGGAGGATTGAAACGATCAACGACAATACATCCACAGAAAAGATCGTTAAGATCCATATGAGAAATCTGTTACC
AAACCGGATAAATTACAAGTATATATAAGAGAATTAGAGGCATAGACTACGAAGAAGCAATTTTTTTTTCGGGGAAAAGGGAATATATTACTCCTCACAA
ACAAGGTGAGAGATAAAATTACAACTGTTTTCAAGCCAGAAATTAGACATAGACTCACATCGTGCCTTATTTGCTAAGATATGGCTAACACGATTTTGGT
TGCGATGGCTAAGACGAAGAAGCAATTAGTATGTGAAGAAAGGGATAAGAAAGAATCAGGTGGAGAGGAAAAGTAGTGTGCACTGTGCAGAAGAAAGGAA
GCCGATGCCTTGGCCTGGCTTCTTGCTTTTTAACGGCTTGTTTGGCAAGAGTATCGGGAGTTTGGATGAGTAAATTGATGGTAAGATTAATACATGAATT
TGATTTTTAATCCTAGTATTTTTGTTTGGTAGAGGTAGTGAAATTAAAATTGGCAAGAATTAATATATATAGACTAGATTTTTAATGAAAATAGATGGCT
GTTTTTTTTTAAATTAGACAGTACAACGCAGATACTCACAACGCACGCGCACTCACCCCTATAAACGCATACTCACAACGCACGCGCACTCACCCCTATA
AACGCATACACGCAACCCTATCCCTATGAGCATATTTAAAGACTGGGCCGGCAAATCCTTGAGAGTAATCCTACTCTGCATCTTTCATTGGGTTGGGCCT
CAGCCTGGTTAGTGGAAGGAAAGTGGCTAATTATTATACATGTAAGGACGGCGACAGATTTCCAAACACAACATTACGTCGATGATTCCAGAAGCAGGTC
GAGATCCTCGTCCGTAGGGTGAGGGCTGCAAGGCGGCATTCAGCGATGATGCTCGGCCGAATTCCAATGGCCTGCCAGAAGTGCATTGCCATTGGGCAGT
GGAGGCAGAGGTGGGCAGCATTTTCATCGGCCATTTTGCAGAGAGCTCGCAAGTGGCAGTGTCGACGATGCAATTCTTCGTGAGGTTGTGTCTACTGTCT
AGTTGGTAGCCGCTCTTTCGCTAGGAACCAGGCAAAGAATTGAATCTTCGGTGATGCTTTGTTCCCAAGATAAATCTCCAACTGCTTCATTCTACTTGTC
CTTGTAGCAACGAGTTGTGTATTGACTTTTTTATATGACATTTGATCATTTTTTTCAATTAAAAAGTATATAAATATTTTTTTTTTGTTGTGATATGTTT
TATATTACTAAAGATGTGCATTCCTATTGCCAATAATCACTCGATTGTTGGAGTTTGGGCATGAGACTTGACAGGGAGCTCCAATTCACCCCAATTTTGA
CATCTGGATTAAAGAGGAGTCTTCATACTTTTTCCAAAGCCAAGCATCCCATCTCGAGTGCAAGGAATGGGCCAAGAAGCCCATACATGGCCCATGTATG
ATCCGCAACATTGCTTGGGCCAGAGCCCATCACTGGTGGAGAAACCATCTTTGGTCGGTCCACCCAAATCCACAATAGTCTCGGTTCCAATAAAAACCGG
GACTAAAAAATATTTTTAGTCCCGGTTTATAACTATAAGGGGACTATATCATCTTTAATCCCGGTTCGTGTTATCAACCGAGACTAAAAATCATCTT